62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
34 lines
1.3 KiB
Python
34 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Angsd(MakefilePackage):
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"""Angsd is a program for analysing NGS data. The software can handle a
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number of different input types from mapped reads to imputed genotype
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probabilities. Most methods take genotype uncertainty into account
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instead of basing the analysis on called genotypes. This is especially
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useful for low and medium depth data."""
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homepage = "https://github.com/ANGSD/angsd"
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url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz"
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version('0.921', sha256='8892d279ce1804f9e17fe2fc65a47e5498e78fc1c1cb84d2ca2527fd5c198772')
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version('0.919', sha256='c2ea718ca5a5427109f4c3415e963dcb4da9afa1b856034e25c59c003d21822a')
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depends_on('htslib')
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conflicts('^htslib@1.6:', when='@0.919')
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def setup_environment(self, spack_env, run_env):
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run_env.set('R_LIBS', prefix.R)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('angsd', join_path(prefix.bin))
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install_tree('R', prefix.R)
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install_tree('RES', prefix.RES)
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install_tree('scripts', prefix.scripts)
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