30 lines
1.2 KiB
Python
30 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RTmixclust(RPackage):
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"""Implementation of a clustering method for time series gene expression
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data based on mixed-effects models with Gaussian variables and
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non-parametric cubic splines estimation. The method can robustly account
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for the high levels of noise present in typical gene expression time
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series datasets."""
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homepage = "https://bioconductor.org/packages/TMixClust/"
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git = "https://git.bioconductor.org/packages/TMixClust.git"
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version('1.0.1', commit='0ac800210e3eb9da911767a80fb5582ab33c0cad')
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depends_on('r-gss', type=('build', 'run'))
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depends_on('r-mvtnorm', type=('build', 'run'))
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depends_on('r-zoo', type=('build', 'run'))
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depends_on('r-cluster', type=('build', 'run'))
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depends_on('r-biocparallel', type=('build', 'run'))
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depends_on('r-flexclust', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-spem', type=('build', 'run'))
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depends_on('r@3.4.3:3.4.9', when='@1.0.1')
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