62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
57 lines
2.0 KiB
Python
57 lines
2.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Mummer(Package):
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"""MUMmer is a system for rapidly aligning entire genomes."""
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homepage = "http://mummer.sourceforge.net/"
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url = "https://sourceforge.net/projects/mummer/files/mummer/3.23/MUMmer3.23.tar.gz/download"
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version('3.23', sha256='1efad4f7d8cee0d8eaebb320a2d63745bb3a160bb513a15ef7af46f330af662f')
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depends_on('gnuplot')
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depends_on('perl', type=('build', 'run'))
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patch('Makefile.patch')
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patch('scripts-Makefile.patch')
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def patch(self):
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"""Fix mummerplot's use of defined on hashes (deprecated
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since perl@5.10, made illegal in perl@5.20."""
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kwargs = {'string': True}
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filter_file('defined (%', '(%', 'scripts/mummerplot.pl',
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**kwargs)
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def install(self, spec, prefix):
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if self.run_tests:
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make('check')
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make('INSTALL_TOP_DIR={0}'.format(prefix))
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bd = prefix.bin
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abd = join_path(prefix, 'aux_bin')
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sd = join_path(prefix, 'scripts')
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mkdirp(bd)
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mkdirp(abd)
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mkdirp(sd)
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bins = ["show-tiling", "show-snps", "show-coords", "show-aligns",
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"show-diff", "delta-filter", "combineMUMs", "mummer",
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"repeat-match", "annotate", "mgaps", "gaps", "dnadiff",
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"nucmer2xfig", "run-mummer3", "mummerplot", "promer",
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"run-mummer1", "nucmer", "mapview", "exact-tandems"]
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aux_bins = ["aux_bin/postnuc", "aux_bin/postpro",
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"aux_bin/prenuc", "aux_bin/prepro"]
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scripts = ["scripts/Foundation.pm"]
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for f in bins:
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install(f, join_path(bd, f))
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for f in aux_bins:
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install(f, join_path(abd, f[8:]))
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for f in scripts:
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install(f, join_path(sd, f[8:]))
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