37 lines
1.3 KiB
Python
37 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Metabat(SConsPackage):
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"""MetaBAT, an efficient tool for accurately reconstructing single
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genomes from complex microbial communities."""
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homepage = "https://bitbucket.org/berkeleylab/metabat"
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url = "https://bitbucket.org/berkeleylab/metabat/get/v2.12.1.tar.gz"
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version('2.12.1', 'c032f47a8b24e58a5a9fefe52cb6e0f8')
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version('2.11.2', sha256='9baf81b385e503e71792706237c308a21ff9177a3211c79057dcecf8434e9a67')
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depends_on('boost@1.55.0:', type=('build', 'run'))
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depends_on('perl', type='run')
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def setup_environment(self, spack_env, run_env):
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spack_env.set('BOOST_ROOT', self.spec['boost'].prefix)
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def install_args(self, spec, prefix):
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return ["PREFIX={0}".format(prefix)]
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@run_after('build')
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def fix_perl_scripts(self):
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filter_file(r'#!/usr/bin/perl',
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'#!/usr/bin/env perl',
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'aggregateBinDepths.pl')
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filter_file(r'#!/usr/bin/perl',
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'#!/usr/bin/env perl',
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'aggregateContigOverlapsByBin.pl')
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