28 lines
1.0 KiB
Python
28 lines
1.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RDeseq(RPackage):
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"""Estimate variance-mean dependence in count data from
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high-throughput sequencing assays and test for differential
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expression based on a model using the negative binomial
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distribution."""
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homepage = "https://www.bioconductor.org/packages/DESeq/"
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git = "https://git.bioconductor.org/packages/DESeq.git"
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version('1.28.0', commit='738371466e6ccf00179fd35b617c8ba0e1e91630')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-locfit', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-genefilter', type=('build', 'run'))
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depends_on('r-geneplotter', type=('build', 'run'))
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depends_on('r-mass', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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