..
abinit
abinit: fix dependency on fftw ( #14739 )
2020-02-04 15:29:21 +01:00
abseil-cpp
abyss
accfft
ace
ack
activeharmony
activemq
acts-core
acts-core: added v0.16.0 ( #14839 )
2020-02-10 11:06:56 +01:00
adept-utils
adf
adiak
adios
adios2
adlbx
adol-c
aegean
aida
akantu
akantu: new package at v3.0.0 ( #14685 )
2020-02-04 11:04:59 +01:00
alan
albany
albert
alglib
allpaths-lg
alluxio
alquimia
alsa-lib
aluminum
Hydrogen: update dependency on aluminum ( #14760 )
2020-02-10 12:13:47 -08:00
amber
amdblis
Added optimized version of Blis for AMD ( #14780 )
2020-02-06 07:58:51 -06:00
amg
amg2013
aml
aml: adds 'develop' and 'master' targets. ( #14549 )
2020-01-17 16:38:12 -06:00
amp
ampliconnoise
amrex
amrex: Update to version 20.01 ( #14635 )
2020-01-27 10:07:46 +01:00
amrvis
andi
angsd
ant
ant: added versions up to v1.10.7 ( #14764 )
2020-02-06 08:46:13 +01:00
antlr
ants
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
Distributed builds ( #13100 )
2020-02-19 00:04:22 -08:00
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots
Sometimes debugging symbols are helpful ( #14452 )
2020-01-14 11:54:38 -06:00
argp-standalone
argtable
aria2
arm-forge
armadillo
Update armadillo ( #14499 )
2020-01-14 17:49:49 -06:00
arpack-ng
arrow
asagi
ascent
asciidoc
asciidoctor
asdf-cxx
asdf-cxx: new package ( #14637 )
2020-01-27 14:50:18 +01:00
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
athena
atk
atlas
atom-dft
atompaw
atop
atop: added versions up to v2.5.0 ( #14765 )
2020-02-06 08:51:34 +01:00
attr
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
avizo
Fix run environment ( #14908 )
2020-02-13 19:37:39 -06:00
aws-parallelcluster
patch aws-parallelcluster so that it doesn't require enum34 ( #14796 )
2020-02-07 11:20:19 -06:00
awscli
axel
axl
bam-readcount
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
Update and fix bcftools package ( #14505 )
2020-01-14 22:04:47 -06:00
bcl2fastq2
bdftopcf
bdw-gc
beagle
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
bind9
binutils
binutils, libiberty: add version 2.33.1
2020-01-22 21:50:10 -08:00
bioawk
biobloom
biopieces
bismark
bison
Add new version of bison ( #14940 )
2020-02-15 23:18:20 -06:00
bitmap
blasr
blasr-libcpp
blast2go
blast-legacy
blast-plus
blat
blaze
blis
Added optimized version of Blis for AMD ( #14780 )
2020-02-06 07:58:51 -06:00
bliss
blitz
blktrace
bmake
bmi
bmi depends on automake for build
2020-02-12 21:58:35 -08:00
bml
bohrium
bolt
bookleaf-cpp
boost
Fix header-only installation of Boost. ( #14995 )
2020-02-16 15:30:32 -06:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
bref3
breseq
bridger
brigand
brotli
bsseeker2
bucky
bumpversion
busco
busybox
butter
butterflypack
bwa
bwtool
byobu
byobu: add version 5.131 ( #14932 )
2020-02-13 19:23:25 -06:00
bzip2
c-ares
c-blosc
c-blosc2
c-lime
cabana
caffe
cairo
Add new version of cairo ( #14941 )
2020-02-17 17:41:07 -06:00
cairomm
caliper
callpath
camellia
camx
candle-benchmarks
cantera
canu
cap3
capnproto
capnproto: New package. ( #14557 )
2020-01-19 17:20:22 -06:00
capstone
cardioid
casacore
Updates to casacore package ( #14552 )
2020-01-17 20:02:51 -06:00
cask
casper
cassandra
catalyst
catch2
ENH: add catch2 CMake install ( #15008 )
2020-02-18 23:48:24 -06:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
Add new version of ccache; update URL ( #14942 )
2020-02-17 17:40:34 -06:00
ccfits
ccs-qcd
cctools
cdbfasta
cdd
cddlib
cdecimal
cdhit
cdo
ceed
cereal
ceres-solver
cfitsio
cgal
cgdb
cgm
cgns
channelflow
chapel
charliecloud
charliecloud package: add version 0.13; remove older versions ( #14591 )
2020-01-24 16:55:55 -08:00
charmpp
charmpp: add version 6.10.0, switch to https for download ( #14930 )
2020-02-13 19:26:26 -06:00
chatterbug
check
chgcentre
chill
chlorop
chombo
chrpath
cinch
circos
cistem
citcoms
cityhash
clamav
clamr
clapack
clara
claw
cleaveland4
cleverleaf
clfft
clhep
Fix CLHEP fetch URL and add new version ( #15032 )
2020-02-17 20:24:33 -06:00
clingo
clingo: new versions ( #14728 )
2020-02-03 07:58:34 -06:00
cln
cln: added v1.3.5 and v1.3.6 ( #14768 )
2020-02-06 09:59:51 +01:00
cloc
cloc: add version 1.84 ( #15012 )
2020-02-15 21:34:11 -06:00
cloog
cloverleaf
cloverleaf3d
clp
clustal-omega
clustalw
cmake
cmake: Fix spack install inside ctest ( #14889 )
2020-02-17 13:26:35 -05:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codar-cheetah: Added version 0.5 ( #14487 )
2020-01-14 11:55:15 -06:00
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
add conduit 0.5.1 release and allow conduit to build against statically linked python ( #14559 )
2020-01-19 20:22:03 -06:00
connect-proxy
constype
converge
coreutils
coreutils: added v8.30 and v8.31 ( #14770 )
2020-02-06 09:56:01 +01:00
corset
cosbench
cosmomc
cosp2
cotter
cowsay
cp2k
cpio
Fix intel-mkl package ( #14856 )
2020-02-11 16:21:49 -06:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cray-libsci
cray-libsci: initial commit ( #14709 )
2020-02-04 10:18:20 -07:00
cromwell
cromwell-womtool
cryptopp
cryptsetup
cscope
csdp
ctffind
cub
Updated both cub and nccl versions. Fixed a bug in the cub download ( #14852 )
2020-02-13 20:10:02 -06:00
cube
cubelib
cubew
cuda
cuda: add libxml2 as a dependency for newer versions ( #14758 )
2020-02-14 12:13:30 -06:00
cuda-memtest
cudnn
Added version for 10.2 compatibility ( #14613 )
2020-01-24 09:30:38 -06:00
cufflinks
cups
curl
curl: New version 7.68.0 ( #14625 )
2020-01-26 17:06:38 -06:00
cvs
cxxopts
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dateutils
davix
Update davix versions and add version restriction for ROOT ( #15038 )
2020-02-18 09:31:59 -06:00
dbcsr
dbus
dcmtk
dd4hep
[dd4hep] Make DDDigi work with current TBB releases ( #14791 )
2020-02-11 17:17:05 -08:00
dealii
deal.II: Add patch for TBB version check ( #14724 )
2020-02-03 13:04:12 +01:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign
dialign-tx
diamond
diffsplice
diffutils
diffutils: Changed the handling of undeclared functions from warning … ( #14593 )
2020-01-28 15:06:37 -06:00
dimemas
direnv
discovar
discovardenovo
dislin
diy
Fixed DIY package missing MPI dependency ( #14704 )
2020-01-31 14:01:17 -06:00
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco
draco: update versions ( #14690 )
2020-01-31 14:03:54 -06:00
dri2proto
dri3proto
drill
add new package : drill ( #14444 )
2020-01-13 21:00:36 -06:00
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes
ecflow
eclipse-gcj-parser
ecos
ecp-io-sdk
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eem
eigen
elasticsearch
Add new version of elasticsearch ( #14945 )
2020-02-15 23:14:01 -06:00
elemental
elfutils
elk
elmerfem
elpa
elsd
elsdc
elsi
emacs
ember
emboss
enchant
enchant: added v2.2.6 and v2.2.7 ( #14775 )
2020-02-06 10:33:16 +01:00
energyplus
entrezdirect
environment-modules
eospac
eq-r
er
erfa
erlang
add new package : erlang ( #14548 )
2020-01-17 13:03:08 -06:00
ermod
erne
es-shell
esmf
essl
ethminer
ethtool
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exiv2
exmcutils
exodusii
exonerate
expat
Add new version of expat ( #14948 )
2020-02-15 23:11:33 -06:00
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache
fabtests
fairlogger
falcon
falcon: Set Py_None to return value ( #14532 )
2020-01-16 12:14:52 -06:00
fann
faodel
fast-global-file-status
fasta
fastdfs
fastjar
fastmath
fastme
fastp
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
Fastx-toolkit package: patch for Fujitsu compiler ( #14218 )
2020-01-29 11:45:37 -08:00
feh
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
fgsl
figtree
file
filebench
fimpute
find-circ
findutils
fio
fish
fixesproto
fl
flac
flang
Flang - Support libomptarget offload to NVidia GPU ( #15015 )
2020-02-15 22:56:58 -06:00
flann
flash
flatbuffers
flatbuffers: add 1.11.0 ( #14663 )
2020-01-29 08:58:41 -06:00
flatcc
flecsale
flecsi
flecsph
flex
flibcpp
flink
add new package : flink ( #14446 )
2020-01-13 20:59:34 -06:00
flint
flit
fltk
flume
Flume ( #14445 )
2020-01-13 21:00:06 -06:00
flux-core
flux-sched
fluxbox
fmt
foam-extend
folly
font-util
fontcacheproto
fontconfig
Add new version of fontconfig ( #14949 )
2020-02-15 23:11:10 -06:00
fontsproto
fonttosfnt
fp16
fpc
fpocket
fqtrim
fr-hit
freebayes
freeglut
freeimage
freetype
Add extra version of freetype ( #14950 )
2020-02-15 23:10:42 -06:00
freexl
fribidi
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
ftgl: Move to frankheckenbach fork + CMakePackage ( #14221 )
2020-01-23 11:43:11 -06:00
fujitsu-mpi
funhpc
fyba
fzf
g4abla
g4emlow
g4ensdfstate
g4ndl
g4neutronxs
g4photonevaporation
g4pii
g4radioactivedecay
g4realsurface
g4saiddata
g4tendl
gams
gapbs
gapcloser
gapfiller
gapfiller: traverse subdirectories in patch ( #14375 )
2020-01-14 17:22:49 -06:00
gasnet
gatk
gaudi
gaussian
gawk
gblocks
gcc
Fix gcc 8.3 build on macOS 10.14 ( #15089 )
2020-02-19 12:50:32 -06:00
gccmakedep
gccxml
gconf
gcta
gdal
Add GDAL 3.0.4 ( #14688 )
2020-01-30 12:08:47 -06:00
gdb
gdb: fix installation ( #15016 )
2020-02-16 08:31:29 -06:00
gdbm
gdk-pixbuf
gdl
geant4
geant4: add missing dependency on geant4-data ( #14767 )
2020-02-06 10:40:56 +01:00
geant4-data
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
genrich
geode
add new package : geode ( #14534 )
2020-01-16 12:11:30 -06:00
geopm
geos
gettext
gflags
ghost
ghostscript
ghostscript: added v9.27 and v9.50 ( #14772 )
2020-02-06 09:57:42 +01:00
ghostscript-fonts
giflib
ginkgo
git
Add missing dep to git. ( #14895 )
2020-02-13 19:45:09 -06:00
git-fat-git
git-imerge
git-lfs
gl2ps
gl2ps: added v1.4.0 ( #14773 )
2020-02-06 09:58:46 +01:00
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common
gnupg
gnuplot
gnuplot: added v5.2.8 ( #14776 )
2020-02-06 10:34:04 +01:00
gnutls
go
go: added v1.13.8 and v1.12.17 ( #15022 )
2020-02-17 11:43:25 +01:00
go-bootstrap
go-md2man
gobject-introspection
googletest
gotcha
gource
gpdb
add new package : gpdb ( #14440 )
2020-01-13 21:04:00 -06:00
gperf
Add extra version of gperf ( #14951 )
2020-02-15 23:10:21 -06:00
gperftools
gpgme
gplates
gprolog
gpu-burn
grackle
gradle
grandr
graph500
graphicsmagick
graphicsmagick: added versions up to v1.3.34 ( #14778 )
2020-02-06 11:12:10 +01:00
graphite2
Build graphite2 with Intel compiler ( #14636 )
2020-01-28 15:03:13 -06:00
graphlib
graphmap
graphviz
Add version constraint to graphviz patches ( #14377 )
2020-01-15 14:14:45 -06:00
grass
grep
grib-api
grnboost
groff
gromacs
grpc
grpc: added v1.25.0, v1.26.0 and v1.27.0 ( #14781 )
2020-02-06 13:20:37 +01:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gtksourceview
gts
guidance
guile
gurobi
gzip
Use separate build directory for gzip ( #14994 )
2020-02-16 08:31:11 -06:00
h5cpp
h5cpp: Download from github release instead of git repo ( #14573 )
2020-01-25 18:39:36 -06:00
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
fix hadoop url and update versions ( #14530 )
2020-01-17 12:56:00 -06:00
halc
half
hama
hapcut2
hapdip
haploview
haproxy
harfbuzz
harfbuzz package: add conflict for @2.3.1: with intel compiler ( #14386 )
2020-01-24 18:05:50 -08:00
harminv
hbase
hc
hdf
hdf5
an argument 'buf_size' of 'h5fget_file_image_c' should be intent(out). ( #15011 )
2020-02-18 08:08:37 -06:00
hdf5-blosc
heaptrack
heffte
heffte: added v0.2 ( #14881 )
2020-02-11 10:02:17 +01:00
help2man
henson
hepmc
[hepmc] Finish the HepMC3 spackage update ( #15036 )
2020-02-18 16:04:59 -06:00
heppdt
hic-pro
highfive
Add extra version of highfive ( #14953 )
2020-02-15 23:09:36 -06:00
highwayhash
hiop
hipsycl
hipsycl: new package and new 'sycl' virtual package ( #14051 )
2020-02-13 07:32:39 +01:00
hisat2
hisea
hive
add new package : hive ( #14443 )
2020-01-13 21:01:27 -06:00
hmmer
homer
hoomd-blue
hotspot
hpccg
hpctoolkit
hpctoolkit: adjust libunwind dependency ( #15099 )
2020-02-19 18:42:51 -06:00
hpcviewer
hpcviewer: add version 2020.01 ( #14718 )
2020-02-02 09:26:21 -06:00
hpgmg
hpl
hpx
update hpx package for the new release 1.4.0 ( #14533 )
2020-01-16 12:12:35 -06:00
hpx5
hsakmt
hstr
htop
htslib
Update htslib and add libcurl variant ( #14504 )
2020-01-14 17:39:09 -06:00
httperf
httpie
hub
hugo
hunspell
hunspell : fix 1.7.0 sha256sum ( #14832 )
2020-02-07 13:13:22 +01:00
hwloc
hwloc: New version 2.1.0 ( #14627 )
2020-01-26 17:22:26 -06:00
hybpiper
hydra
hydrogen
Hydrogen: update dependency on aluminum ( #14760 )
2020-02-10 12:13:47 -08:00
hyphy
hypre
i3
ibm-java
ibmisc
iceauth
icedtea
icedtea: added versions up to v3.9.0 ( #14806 )
2020-02-10 11:08:45 +01:00
icet
ico
icu4c
Update the icu4c package ( #14450 )
2020-01-14 22:05:55 -06:00
id3lib
idba
iegenlib
ignite
add new package : ignite ( #14539 )
2020-01-16 12:04:41 -06:00
igraph
igvtools
ilmbase
imagemagick
Add extra version of imagemagick ( #14954 )
2020-02-15 23:09:06 -06:00
imake
imlib2
imlib2: added v1.6.0 and v1.6.1 ( #14807 )
2020-02-07 14:05:50 +01:00
imp
impute2
infernal
inputproto
intel
added intel parallel 2020.0 and components ( #14451 )
2020-01-13 20:51:22 -06:00
intel-daal
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-gpu-tools
intel-ipp
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-llvm
Adding Intel LLVM compiler ( #13618 )
2020-02-12 12:30:04 -06:00
intel-mkl
Fix intel-mkl package ( #14856 )
2020-02-11 16:21:49 -06:00
intel-mkl-dnn
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-mpi
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-parallel-studio
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-pin
update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel… ( #14783 )
2020-02-06 09:20:01 -06:00
intel-tbb
intel-tbb: update to new tar file names for 2020 versions ( #14924 )
2020-02-13 19:30:10 -06:00
intel-xed
interproscan
Convert encoding of script in interproscan ( #14356 )
2020-01-15 11:32:18 -06:00
intltool
ioapi
ior
IOR package: add version 3.2.1 ( #14582 )
2020-01-24 16:56:59 -08:00
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
iso-codes
itstool
itsx
jackcess
jafka
jags
jali
New package Jali - unstructured mesh infrastructure for multiphysics applications ( #14498 )
2020-01-15 12:32:17 -06:00
jansson
jasper
jbigkit
jchronoss
jdk
jdk temporary fix ( #14550 )
2020-01-17 12:58:58 -06:00
jellyfish
jemalloc
Add extra version of jemalloc ( #14955 )
2020-02-15 23:08:37 -06:00
jmol
jq
json-c
Add extra version of json-c ( #14956 )
2020-02-15 23:08:13 -06:00
json-cwx
json-fortran
json-glib
jsoncpp
jstorm
jube
judy
julia
Update and simplify julia package ( #14756 )
2020-02-18 15:59:09 -06:00
k8
kafka
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kcov
Add new kcov package ( #14574 )
2020-01-20 19:22:05 -06:00
kdiff3
kealib
keepalived
kentutils
kibana
kim-api
kitty
kmergenie
kokkos
kokkos-kernels
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
ladot
laghos
lame
lammps
last
lastz
laszip
latte
launchmon
lazyten
lbann
Hydrogen: update dependency on aluminum ( #14760 )
2020-02-10 12:13:47 -08:00
lbxproxy
lbzip2
lcals
lcms
lcov
ldc
ldc-bootstrap
legion
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive
Fix CMake and update libarchive ( #14684 )
2020-02-03 11:26:38 -05:00
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcint
libcircle
libcircle depends on a provider of pkgconfig for build ( #15029 )
2020-02-17 17:21:58 -06:00
libconfig
libconfig: added v1.7.2 ( #14808 )
2020-02-07 14:04:40 +01:00
libcroco
libctl
libdap4
libdivsufsort
libdmx
libdrm
libdrm: add version 2.4.100 ( #14809 )
2020-02-11 16:57:18 -08:00
libdwarf
libeatmydata
libedit
libedit package: add version 3.1-20191231 ( #14851 )
2020-02-10 10:44:52 -08:00
libelf
libemos
libepoxy
libev
libevent
libevpath
libexif
libfabric
[libfabric@1.9.0] Fix C++ header usage ( #14703 )
2020-01-31 14:01:58 -06:00
libfastcommon
libffi
libffs
libfive
libflame
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
Add extra version of libgit2 ( #14957 )
2020-02-15 23:07:38 -06:00
libglvnd
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libhio: remove autoreconf method ( #14283 )
2020-01-24 18:20:02 -08:00
libiberty
binutils, libiberty: add version 2.33.1
2020-01-22 21:50:10 -08:00
libibumad
libice
libiconv
libid3tag
libidn2
libint
libjpeg
libjpeg-turbo
libkml
libksba
liblas
liblbxutil
liblockfile
libmad
libmatheval
libmaxminddb
libmesh
libmmtf-cpp
libmng
Remove unneeded dependency on gzip for libmng ( #14992 )
2020-02-16 08:30:30 -06:00
libmo-unpack
libmonitor
libnbc
libnl
libnova
libnrm
libnrm needs pkg-config for build ( #15007 )
2020-02-17 12:05:31 -06:00
libnsl
libogg
liboldx
libpaper
libpcap
libpciaccess
libpeas
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
libquo: Update default version from 1.3 to 1.3.1. ( #14585 )
2020-01-22 11:14:26 -08:00
librom
librsb
librsvg
libseccomp
libsecret
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
Add extra version of libsodium ( #14958 )
2020-02-15 23:07:12 -06:00
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
Add extra version of libsvm ( #14959 )
2020-02-15 23:06:48 -06:00
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool
libunistring
libunwind
Add new version of libunwind ( #14947 )
2020-02-17 17:20:50 -06:00
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvips
New package: libvips ( #14794 )
2020-02-11 17:02:39 -08:00
libvorbis
libvterm
libwebp
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
Add extra version of libxkbcommon ( #14961 )
2020-02-15 23:06:17 -06:00
libxkbfile
libxkbui
libxml2
fix cycle dependency in libxml+python ( #13847 )
2020-01-29 12:39:55 -08:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
libzmq
liggghts
lighttpd
lighttpd: added versions up to v1.4.55 ( #14810 )
2020-02-07 14:04:21 +01:00
likwid
linkphase3
linux-headers
listres
lizard
llvm
Update llvm, adjust dependency specs and conflicts ( #14561 )
2020-02-05 20:37:08 -06:00
llvm-flang
Flang - Support libomptarget offload to NVidia GPU ( #15015 )
2020-02-15 22:56:58 -06:00
llvm-openmp
llvm-openmp-ompt
lm-sensors
lmdb
lmod
Updated docstring and version of lmod to v8.3 ( #14687 )
2020-01-30 12:33:16 -06:00
lndir
log4cplus
log4cxx
logstash
loki
lordec
lrslib
lrzip
lsf
lshw
lsof
ltp
ltrace
lua
lua-bitlib
lua-lpeg
lua-luafilesystem
lua-luajit
lua-luaposix
lua-mpack
lucene
luit
lulesh
lumpy-sv
lvm2
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
macsio: cast JsonGetInt from int to unsigned int ( #14736 )
2020-02-12 20:13:26 -06:00
mad-numdiff
mafft
mafft: add 7.453 ( #15006 )
2020-02-15 21:48:26 -06:00
magics
magma
magma: add new version 2.5.2
2020-01-24 15:27:01 -08:00
makedepend
maker
mallocmc
man-db
manta
mapnik
mapserver
maq
margo
mariadb
New version for mariadb and disable dtrace ( #14734 )
2020-02-04 15:01:25 -06:00
mariadb-c-client
mariadb-c-client: Add 3.1.6 and 3.1.5 ( #14510 )
2020-01-15 14:10:47 -06:00
masa
masurca
mathematica
matio
matlab
maven
maven: added versions up to v3.6.3 ( #14811 )
2020-02-07 13:47:38 +01:00
maverick
mawk
mbdyn
New package: MBDyn ( #14438 )
2020-01-24 18:14:14 -08:00
mbedtls
mc
mcl
mdtest
med
med: add a space between literal and identifier ( #14646 )
2020-01-28 14:59:23 -06:00
meep
mefit
megadock
megahit
memaxes
memcached
meme
memkind
memsurfer
meraculous
mercurial
Fix mercurial certificate finding, add latest version ( #15026 )
2020-02-17 17:41:30 -06:00
mercury
mesa
mesa: check aarch64 system type as well ( #14493 )
2020-01-16 12:21:34 -06:00
mesa-glu
meshkit
meson
mesquite
metabat
metall
Add a new package: Metall ( #14903 )
2020-02-15 00:34:32 -06:00
metaphysicl
metis
mfem
mg
mgis
microbiomeutil
migrate
mii
minced
mindthegap
miniaero
miniamr
Added MiniAMR@1.4.4 ( #14667 )
2020-01-29 13:24:22 -06:00
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minizip
minuit
mira
miranda
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab
modern-wheel
modern-wheel: add virtual destructor to BaseMultiParms class ( #14899 )
2020-02-18 23:48:46 -06:00
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-c-driver
mongo-cxx-driver
mono
[mono] add version 6.8.0.105
2020-02-11 16:49:35 -08:00
montage
moosefs
moreutils
Moreutils: add new package ( #14653 )
2020-01-28 15:02:07 -06:00
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant
MPark.Variant: Patch NVCC C++14 Build 2 ( #14434 )
2020-01-22 11:29:02 -08:00
mpc
mpdecimal
mpe2
mpest
mpfr
mpi-bash
mpich
mpich: Correct package name in output ( #14503 )
2020-01-14 17:46:39 -06:00
mpifileutils
mpifileutils: add v0.10 ( #14644 )
2020-01-27 20:33:26 -08:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mpt
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
mstk
MSTK package: add version 3.3.2 ( #14689 )
2020-02-04 11:15:45 -08:00
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
musl
muster
mutationpp
mvapich2
mxml
mxnet
mysql
mysql: added v8.0.17, v8.0.18 and v8.0.19 ( #14813 )
2020-02-07 13:46:55 +01:00
nag
NAG Compiler 7.0 (Build 7009) download checksum ( #14840 )
2020-02-07 09:33:37 -06:00
nalu
nalu-wind
namd
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
Updated both cub and nccl versions. Fixed a bug in the cub download ( #14852 )
2020-02-13 20:10:02 -06:00
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest
netcdf-c
netcdf-cxx
netcdf-cxx4
netcdf-fortran
Set netcdf-fortran to build serially with Intel compiler ( #14461 )
2020-01-28 15:13:51 -06:00
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
netperf
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
nicstat
nim
ninja
ninja: add v1.10.0 ( #14647 )
2020-01-28 09:34:31 -08:00
ninja-fortran
nix
nlohmann-json
Add extra version of nlohmann-json ( #14962 )
2020-02-15 23:05:54 -06:00
nlopt
nmap
nnvm
node-js
node-js: Add 12.16.0 and 13.8.0 ( #15024 )
2020-02-17 20:25:20 -06:00
notmuch
npb
npm
npm: Add 6.13.7 ( #15034 )
2020-02-18 12:00:01 -06:00
npth
nrm
nseg
nsimd
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave: enable 64-bit BLAS builds. ( #15035 )
2020-02-18 23:49:27 -06:00
octave-optim
octave-splines
octave-struct
octopus
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
Bump Open Babel to 3 ( #14738 )
2020-02-04 21:05:19 -06:00
openblas
Fix OpenBLAS 0.3.8 build on darwin ( #15041 )
2020-02-18 14:23:54 -06:00
opencascade
opencoarrays
opencv
OpenCV package: add versions 4.2.0, 4.1.2, and 4.1.1( #14814 )
2020-02-11 17:34:44 -08:00
openexr
openfast
openfdtd
openfoam
openfoam-org
openfst
opengl
openglu
openimageio
openjdk
openjpeg
openkim-models
openldap
openldap: added v2.4.49 ( #14815 )
2020-02-10 09:40:46 +01:00
openmc
openmolcas
openmpi
openmpi: swat btl/uct ucx 1.7 bug ( #14522 )
2020-01-18 13:52:26 -06:00
openmx
opennurbs
openpa
openpmd-api
ENH: add catch2 CMake install ( #15008 )
2020-02-18 23:48:24 -06:00
openresty
openscenegraph
openslide
openspeedshop
Qt4 patches ( #15025 )
2020-02-17 17:21:31 -06:00
openspeedshop-utils
openssh
openssl
openstf
opentsdb
opium
optional-lite
optipng
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osqp
osu-micro-benchmarks
otf
otf2
p3dfft3
New package: p3dfft3 ( #14508 )
2020-01-24 17:20:36 -08:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pandoc
pango
pangomm
pangomm: added versions up to v2.41.3 ( #14816 )
2020-02-07 13:43:43 +01:00
papi
papyrus
paradiseo
parallel
parallel-netcdf
paraver
paraview
Paraview: fix PYTHONPATH for static build. ( #14648 )
2020-02-12 13:24:09 -05:00
parmetis
parmgridgen
parquet-cpp
parsimonator
parsplice
partitionfinder
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcma: set return value and change return type of function ( #14579 )
2020-01-28 15:08:35 -06:00
pcre
Add extra version of pcre ( #14963 )
2020-02-15 23:05:30 -06:00
pcre2
pdf2svg
pdftk
pdsh
pdt
Fixing GCC compiler setting for PDT package
2020-01-24 17:03:52 -08:00
pegtl
pegtl: change to virtual destructor ( #14939 )
2020-02-18 08:08:10 -06:00
pennant
percept
perl
perl: Fix binary detection ( #14536 )
2020-01-16 10:11:53 -06:00
perl-acme-damn
perl-algorithm-diff
perl-alien-build
perl-alien-libxml2
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bioperl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-db-file
perl-dbd-mysql
perl-dbd-pg
perl-dbd-sqlite
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-devel-symdump
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-error
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-ffi-checklib
perl-file-chdir
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-forks
perl-gd
perl-gdgraph
perl-gdgraph-histogram
perl-gdtextutil
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-io-all
perl-io-compress
perl-io-html
perl-io-prompt
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-io-stringy
perl-io-tty
perl-ipc-run
perl-json
perl-libwww-perl
perl-libxml-perl
perl-list-moreutils
perl-list-moreutils-xs
perl-log-log4perl
perl-logger-simple
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-mailtools
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-path-tiny
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perl-unsafe-signals
perl-perl-version
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intervaltree
perl-set-intspan
perl-set-scalar
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-sys-sigaction
perl-task-weaken
perl-term-readline-gnu
perl-termreadkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-timedate
perl-try-tiny
perl-uri
perl-want
perl-www-robotrules
perl-xml-dom
perl-xml-dom-xpath
perl-xml-filter-buffertext
perl-xml-libxml
perl-xml-libxslt
perl-xml-namespacesupport
perl-xml-parser
perl-xml-parser-lite
perl-xml-quote
perl-xml-regexp
perl-xml-sax
perl-xml-sax-base
perl-xml-sax-writer
perl-xml-simple
perl-xml-twig
perl-xml-writer
perl-xml-xpathengine
perl-yaml
perl-yaml-libyaml
petsc
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat
phred
phylip
phyluce
picard
picsar
picsarlite
pidx
pig
pigz
pilon
pindel
pipework
piranha
pism
pixman
Add extra version of pixman ( #14964 )
2020-02-15 23:05:09 -06:00
pixz
pkg-config
pkgconf
pktools
planck-likelihood
plasma
platypus
plink
plplot
plplot: added v5.14.0 and v5.15.0 ( #14817 )
2020-02-07 13:30:12 +01:00
plumed
pmdk
update pmdk to 1.8 ( #14733 )
2020-02-03 19:15:52 -06:00
pmgr-collective
pmix
pmlib
pnfft
pngquant
pngquant : add depency on libpng ( #14836 )
2020-02-10 09:39:45 +01:00
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
poppler-data
popt
porta
portage
portage: fix compile on icc ( #14707 )
2020-01-31 13:35:20 -06:00
portcullis
postgresql
powerapi
package: Add newer version of PowerAPI package ( #15005 )
2020-02-16 21:17:07 -06:00
ppl
pplacer
prank
precice
precice: add version 2.0.0 ( #14842 )
2020-02-11 10:06:03 +01:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
procps
prodigal
proj
protobuf
protobuf: Fix intel compiler failures. ( #14916 )
2020-02-12 16:21:43 -05:00
protobuf-c
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
PUMI package: add version 2.2.2 ( #14751 )
2020-02-05 17:32:35 -08:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
Add extra version of py-absl-py ( #14965 )
2020-02-15 23:04:40 -06:00
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-agate
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-agate-dbf
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-agate-excel
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-agate-sql
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-alabaster
py-alembic
py-altgraph
py-amqp
py-ansible
add new package : py-ansible ( #14436 )
2020-01-14 11:58:48 -06:00
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-arrow
Add extra version of py-arrow ( #14966 )
2020-02-15 23:02:21 -06:00
py-asciitree
py-asdf
py-ase
py-asn1crypto
Add extra version of py-asn1crypto ( #14967 )
2020-02-15 23:03:17 -06:00
py-aspy-yaml
py-asserts
py-astor
py-astroid
Add extra version of py-astroid ( #14968 )
2020-02-15 23:01:53 -06:00
py-astropy
py-astunparse
py-async-generator
py-atomicwrites
py-atropos
py-attrs
Add extra version of py-attrs ( #14969 )
2020-02-15 23:01:24 -06:00
py-autopep8
Add extra version of py-autopep8 ( #14970 )
2020-02-17 17:39:22 -06:00
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
Add extra version of py-backports-abc ( #14978 )
2020-02-15 22:47:05 -06:00
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile
py-backports-weakref
py-basemap
py-bcbio-gff
py-bcrypt
py-beautifulsoup4
py-billiard
py-binaryornot
py-binaryornot: new package ( #14906 )
2020-02-13 11:42:29 +01:00
py-bintrees
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-black: update url, add 19.3b0 ( #14664 )
2020-01-29 08:56:54 -06:00
py-bleach
py-blessed
py-blessings
py-blinker
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-brotlipy
py-bsddb3
py-bx-python
py-bz2file
py-cached-property
py-cachetools
py-cairocffi
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-cdsapi
py-celery
py-certifi
Add extra version of py-certifi ( #14977 )
2020-02-15 22:47:28 -06:00
py-certipy
py-cf-units
py-cffi
py-cfgv
py-cftime
py-chai
py-chardet
py-checkm-genome
py-cheetah
py-cheroot
py-cherrypy
py-cinema-lib
py-click
py-click-plugins
py-cligj
py-clipboard
py-cloudpickle
py-clustershell
py-clustershell: new package ( #14914 )
2020-02-13 10:03:45 +01:00
py-codecov
py-cogent
py-colorama
py-coloredlogs
py-colorlog
py-colormath
py-colorpy
py-configobj
py-configparser
py-contextlib2
py-convertdate
py-cookiecutter
py-cookiecutter: new package ( #14911 )
2020-02-17 20:27:06 -06:00
py-counter
py-cov-core
py-coverage
Add extra version of py-coverage ( #14976 )
2020-02-15 22:48:10 -06:00
py-crispresso
py-crossmap
py-cryptography
Add extra version of py-cryptography ( #14975 )
2020-02-18 14:26:02 -06:00
py-cssselect
py-csvkit
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-current
py-cutadapt
py-cvxopt
py-cvxpy
py-cycler
py-cython
Add extra version of py-cython ( #14974 )
2020-02-15 22:52:36 -06:00
py-dask
Add extra version of py-dask; add new variant and dependencies ( #14973 )
2020-02-19 12:59:03 -06:00
py-dataclasses
py-dateparser
py-dbf
py-dbfread
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-decorator
Add extra version of py-decorator ( #14980 )
2020-02-15 22:44:28 -06:00
py-deeptools
py-deeptoolsintervals
py-defusedxml
Add extra version of py-defusedxml ( #14972 )
2020-02-18 11:50:19 -06:00
py-dendropy
py-deprecation
py-descartes
py-dill
Add extra version of py-dill ( #14971 )
2020-02-17 17:38:53 -06:00
py-discover
py-distributed
Add extra version of py-dask; add new variant and dependencies ( #14973 )
2020-02-19 12:59:03 -06:00
py-dlcpar
py-dnaio
py-docopt
py-docutils
py-docutils-stubs
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-ecdsa
py-ecos
py-edffile
py-editdistance
py-elasticsearch
py-elasticsearch: added v7.5.1 and v6.4.0 ( #14913 )
2020-02-13 10:06:01 +01:00
py-elephant
py-emcee
py-empy
py-entrypoints
py-enum34
patch aws-parallelcluster so that it doesn't require enum34 ( #14796 )
2020-02-07 11:20:19 -06:00
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus-bundler
py-extras
py-fallocate
py-fastaindex
py-fastcache
py-fasteners
py-faststructure
py-filelock
py-filemagic
py-fiona
py-fiscalyear
py-fixtures
py-flake8
py-flake8-import-order
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye
py-fn-py
py-fortranformat
py-fparser
py-freezegun
py-fsspec
py-funcsigs
py-functools32
py-fusepy
py-future
py-futures
Add extra version of py-futures ( #14979 )
2020-02-17 17:25:46 -06:00
py-fypp
py-gast
py-gdbgui
py-gdc-client
py-gee-asset-manager
py-geeadd
py-geeup
py-genders
py-genshi
py-gensim
py-geoalchemy2
py-geopandas
py-gevent
py-gf256
py-git-review
py-gnuplot
py-goatools
py-google-api-core
py-google-api-python-client
py-google-auth
py-google-auth-httplib2
py-google-cloud-core
py-google-cloud-storage
py-google-pasta
py-google-resumable-media
py-googleapis-common-protos
py-gpaw
py-graphviz
Add extra version of py-graphviz ( #14981 )
2020-02-18 12:56:18 -06:00
py-greenlet
py-grequests
py-griddataformats
[py-griddataformats] added new versions ( #14671 )
2020-01-29 13:23:22 -06:00
py-grpcio
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-h5sh
py-hacking
py-hdfs
py-heapdict
Add extra version of py-dask; add new variant and dependencies ( #14973 )
2020-02-19 12:59:03 -06:00
py-hepdata-validator
py-hpcbench
py-hpcbench: new package ( #14915 )
2020-02-18 14:21:46 -06:00
py-hpccm
py-html2text
py-html5lib
py-htmlgen
py-htseq
py-httpbin
py-httplib2
py-humanfriendly
py-humanize
py-hvac
py-hypothesis
py-ics
py-identify
py-idna
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
Add extra version of py-iminuit ( #14982 )
2020-02-17 12:35:04 -06:00
py-importlib
py-importlib-metadata
Add extra version of py-importlib-metadata ( #14983 )
2020-02-15 22:35:47 -06:00
py-importlib-resources
py-iniparse
py-intervaltree
py-invoke
py-ipaddress
Add extra version of py-ipaddress ( #14984 )
2020-02-15 22:35:23 -06:00
py-ipdb
py-ipykernel
Add extra version of py-ipykernel ( #14985 )
2020-02-15 22:33:04 -06:00
py-ipython
Add extra version of py-ipython ( #14986 )
2020-02-15 22:32:28 -06:00
py-ipython-genutils
py-ipywidgets
Add extra version of py-ipywidgets ( #14987 )
2020-02-18 11:55:47 -06:00
py-isodate
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-isort
Add extra version of py-isort ( #14988 )
2020-02-19 12:59:45 -06:00
py-itsdangerous
py-jaraco-functools
py-jdatetime
py-jdcal
py-jedi
Add extra version of py-jedi ( #14990 )
2020-02-19 13:01:48 -06:00
py-jellyfish
py-jinja2
Add extra version of py-jinja2 ( #14989 )
2020-02-15 22:27:53 -06:00
py-jinja2-time
py-jinja2-time: new package ( #14910 )
2020-02-13 10:07:07 +01:00
py-jmespath
py-joblib
[py-joblib] added version 0.11 ( #14672 )
2020-01-30 02:27:04 -08:00
py-jplephem
py-jprops
py-jpype1
Add extra version of py-jpype1; add numpy as optional (variant) dependency ( #14991 )
2020-02-15 22:24:44 -06:00
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter
py-jupyter-client
Add extra version of py-jupyter-client ( #14996 )
2020-02-15 22:21:48 -06:00
py-jupyter-console
py-jupyter-core
py-jupyterhub
py-keras
py-keras-applications
py-keras-preprocessing
py-kitchen
py-kiwisolver
py-kmodes
py-kombu
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-leather
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-libconf
py-libensemble
py-ligo-segments
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
Add extra version of py-logilab-common ( #14997 )
2020-02-18 11:49:46 -06:00
py-lru-dict
py-lscsoft-glue
py-luigi
py-lxml
Add extra version + variants of py-lxml ( #14999 )
2020-02-17 12:24:59 -06:00
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-magic
py-magic: new package ( #14912 )
2020-02-13 10:03:18 +01:00
py-mako
py-markdown
py-markupsafe
py-matplotlib
Add extra version of py-matplotlib; fix dependency on six ( #15000 )
2020-02-17 17:02:17 -06:00
py-mccabe
py-mdanalysis
py-mechanize
py-memory-profiler
py-merlin
py-merlinwf
Add the py-merlinwf package ( #14622 )
2020-01-27 17:26:43 -06:00
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-monotonic
py-monty
py-more-itertools
Add extra version of py-more-itertools ( #15042 )
2020-02-18 11:37:26 -06:00
py-mpi4py
py-mpld3
py-mpmath
py-msgpack
py-multi-key-dict
py-multiprocess
py-multiqc
py-munch
py-mx
py-myhdl
py-mypy
py-mypy-extensions
py-mysql-connector-python
py-mysqlclient
py-mysqldb1
py-natsort
py-nbconvert
Add extra version of py-nbconvert ( #15044 )
2020-02-18 11:59:10 -06:00
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nodeenv
py-nose
py-nose2
py-nose-cov
py-nosexcover
py-notebook
py-notebook: make py-setuptools a run dependency ( #15095 )
2020-02-19 18:41:27 -06:00
py-numba
py-numcodecs
py-numexpr
py-numexpr3
py-numpy
py-numpydoc
py-oauth2client
py-oauthlib
Add extra version of py-oauthlib ( #15045 )
2020-02-18 11:34:57 -06:00
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-opppy
py-opppy package: add version 0_1_2 ( #14229 )
2020-01-24 18:58:22 -08:00
py-opt-einsum
py-ordereddict
py-oset
py-osqp
py-overpy
py-owslib
Add extra version of py-owslib ( #15046 )
2020-02-18 11:34:30 -06:00
py-packaging
py-palettable
py-pamela
py-pandas
py-pandocfilters
py-parameterized
py-paramiko
py-parse
py-parsedatetime
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-parso
Add extra version of py-jedi ( #14990 )
2020-02-19 13:01:48 -06:00
py-partd
py-path-py
py-pathlib
py-pathlib2
Add extra version of py-pathlib2 ( #15048 )
2020-02-18 11:58:45 -06:00
py-pathos
py-pathspec
py-patsy
py-pauvre
py-pbr
Add extra version of py-pbr ( #15049 )
2020-02-18 11:57:39 -06:00
py-pep8
py-pep8-naming
py-performance
py-periodictable
py-petsc4py
py-pexpect
Add extra version of py-pexpect ( #15050 )
2020-02-18 11:57:08 -06:00
py-phonopy
py-pickleshare
Add extra version of py-pickleshare ( #15059 )
2020-02-19 13:37:36 -06:00
py-picrust
py-pil
py-pillow
Add extra version of py-pillow ( #15060 )
2020-02-19 13:35:22 -06:00
py-pint
py-pip
Add extra version of py-pip ( #15061 )
2020-02-19 13:34:56 -06:00
py-pipits
py-pispino
py-pkgconfig
py-pkginfo
py-planar
py-plotly
py-pluggy
py-ply
py-pmw
py-portend
py-poster
py-pox
py-poyo
py-poyo: new package ( #14909 )
2020-02-13 10:07:29 +01:00
py-ppft
py-pre-commit
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
Add extra version of py-prompt-toolkit ( #15062 )
2020-02-19 14:50:30 -06:00
py-protobuf
Added new hashes for the protobuf and py-protobuf packates. ( #14546 )
2020-01-16 17:02:50 -06:00
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-py-cpuinfo
py-pyani
py-pyarrow
py-pyasn1
Add extra version of py-pyasn1 ( #15066 )
2020-02-19 13:32:23 -06:00
py-pyasn1-modules
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pycbc
py-pychecker
py-pycmd
py-pycodestyle
py-pycparser
py-pycrypto
py-pycuda
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydot2
py-pydotplus
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdal
pygdal and gdal versions should be in lockstep ( #14630 )
2020-01-26 18:35:16 -06:00
py-pygdbmi
py-pygit2
py-pyglet
py-pygments
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pyinstrument
py-pyinstrument-cext
py-pyjwt
py-pyke
py-pykml
py-pykwalify
py-pyliblzma
py-pylint
py-pymatgen
py-pymeeus
py-pyminifier
py-pymol
py-pymongo
py-pymorph
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo
py-pyopenssl
py-pypar
py-pyparsing
Add extra version of py-pyparsing ( #15069 )
2020-02-19 13:29:43 -06:00
py-pypeflow
py-pyperclip
py-pyperf
py-pyperf: add 1.6.{0,1} ( #14662 )
2020-01-29 09:00:03 -06:00
py-pyprof2html
py-pyproj
Add extra version of py-pyproj ( #15070 )
2020-02-19 13:28:56 -06:00
py-pyqi
py-pyqt4
py-pyqt5
Add extra version of py-pyqt5 ( #15071 )
2020-02-19 13:28:24 -06:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pyside2
py-pysmartdl
py-pysocks
py-pyspark
py-pysqlite
py-pytailf
py-pytest
Add extra version of py-pytest ( #15073 )
2020-02-19 13:26:18 -06:00
py-pytest-cache
py-pytest-cov
py-pytest-flake8
py-pytest-forked
py-pytest-httpbin
py-pytest-isort
py-pytest-mock
py-pytest-mypy
py-pytest-pep8
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-editor
py-python-engineio
py-python-gitlab
py-python-igraph
py-python-jenkins
py-python-ldap
py-python-levenshtein
py-python-logstash
py-python-magic
py-python-mapnik
py-python-meep
py-python-memcached
py-python-oauth2
py-python-rapidjson
py-python-slugify
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-python-socketio
py-python-subunit
py-python-utils
py-pythonqwt
py-pytimeparse
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-pytools
py-pytz
Add extra version of py-pytz ( #15077 )
2020-02-19 13:25:45 -06:00
py-pyudev
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
Add extra version of py-pyyaml ( #15078 )
2020-02-19 13:25:23 -06:00
py-pyzmq
Add extra version of py-pyzmq ( #15080 )
2020-02-19 12:56:57 -06:00
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger-fm
py-rasterio
py-ratelim
py-raven
py-readme-renderer
py-redis
py-regex
py-reportlab
py-repoze-lru
py-requests
py-requests-futures
py-requests-mock
py-requests-oauthlib
py-requests-toolbelt
py-restview
py-retrying
py-rnacocktail
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-ruamel-yaml
py-s3cmd
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-build
py-scikit-image
py-scikit-learn
Add extra version of py-scikit-learn ( #15087 )
2020-02-19 14:51:25 -06:00
py-scikit-optimize
py-scipy
Add py-scipy 1.2.3 ( #14583 )
2020-01-21 15:29:50 -06:00
py-scoop
py-scp
py-scs
py-seaborn
py-selenium
py-semantic-version
py-semver
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-setuptools-scm-git-archive
py-sfepy
py-sgp4
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-simplekml
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-smart-open
py-sncosmo
py-snowballstemmer
py-snuggs
py-sortedcontainers
py-soupsieve
py-spatialist
py-spdlog
Added py-spdlog package ( #14514 )
2020-01-18 13:51:55 -06:00
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-applehelp
py-sphinxcontrib-bibtex
py-sphinxcontrib-devhelp
py-sphinxcontrib-htmlhelp
py-sphinxcontrib-issuetracker
py-sphinxcontrib-jsmath
py-sphinxcontrib-programoutput
py-sphinxcontrib-qthelp
py-sphinxcontrib-serializinghtml
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stestr
py-stevedore
py-storm
py-stratify
py-subprocess32
py-subrosa
py-svgpathtools
py-svgwrite
py-symengine
py-symfit
py-sympy
py-syned
py-systemd-python
py-tables
Fix allowed python versions of py-tables ( #14073 )
2020-02-18 11:38:00 -06:00
py-tabulate
py-tap-py
py-tatsu
py-tblib
py-tempora
py-tensorflow
Add TensorFlow 1.15.2 ( #14624 )
2020-01-26 15:41:09 -06:00
py-tensorflow-estimator
py-termcolor
py-terminado
py-testinfra
py-testpath
py-testrepository
py-testresources
py-testscenarios
py-testtools
py-tetoolkit
py-text-unidecode
Update py-csvkit ( #14525 )
2020-01-15 22:45:04 -06:00
py-texttable
py-theano
Use CudaPackage mixin for py-theano ( #14577 )
2020-01-21 09:27:41 -06:00
py-thirdorder
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch
Git fetching: add option to remove submodules ( #14370 )
2020-02-03 19:02:45 -08:00
py-torchvision
Add py-torchvision 0.5.0 ( #14544 )
2020-01-16 15:46:55 -06:00
py-tornado
py-tox
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview
py-twine
py-twisted
py-typed-ast
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-ujson
py-umalqurra
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate
py-urllib3
py-urwid
py-us
py-usgs
py-uwsgi
py-vcversioner
py-vermin
Add py-vermin package ( #14631 )
2020-01-26 18:34:56 -06:00
py-vine
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-voluptuous
py-voluptuous update versions ( #14556 )
2020-01-19 10:39:11 -06:00
py-vsc-base
py-vsc-install
py-wand
py-warlock
py-wcsaxes
py-wcwidth
py-weave
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-whichcraft
py-whichcraft: new package ( #14907 )
2020-02-14 08:00:58 -06:00
py-widgetsnbextension
py-wradlib
py-wrapt
py-wub
py-wxmplot
py-wxpython
py-xarray
py-xattr
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xlwt
py-xmlrunner
py-xmltodict
py-xopen
py-xpyb
py-xvfbwrapper
py-yajl
py-yajl: new package at 0.3.5 ( #14278 )
2020-01-14 17:23:32 -06:00
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zarr
py-zc-buildout
py-zc-lockfile
py-zict
Add extra version of py-dask; add new variant and dependencies ( #14973 )
2020-02-19 12:59:03 -06:00
py-zipp
py-zope-event
py-zope-interface
py-zxcvbn
pythia6
pythia8
pythia8: added old versions, build depend on rsync ( #14740 )
2020-02-04 15:27:57 +01:00
python
fix env vars before install ( #14575 )
2020-02-13 20:16:34 -06:00
qbank
qbox
qca
qemu
qhull
qjson
qmcpack
Add latest 3.9.x releases QMCPACK ( #15056 )
2020-02-18 23:50:07 -06:00
qmd-progress
qnnpack
qorts
qperf
qrupdate
qscintilla
qt
Qt4 patches ( #15025 )
2020-02-17 17:21:31 -06:00
qt-creator
qtgraph
qthreads
qtkeychain
quantum-espresso
quinoa
qwt
qwt: added v6.1.3 ( #14820 )
2020-02-07 13:41:30 +01:00
qwtpolar
r
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adgoftest
New package: r-copula ( #14874 )
2020-02-10 10:40:47 +01:00
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-aod
New package: r-exomedepth ( #14884 )
2020-02-13 19:52:43 -06:00
r-ape
r-argparse
r-aroma-light
New package: r-pscbs ( #14867 )
2020-02-10 10:41:56 +01:00
r-askpass
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beachmat
r-beanplot
r-beeswarm
r-bfast
r-bfastspatial
r-bglr
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-bio3d
r-biobase
r-biocfilecache
r-biocgenerics
r-biocinstaller
r-biocmanager
r-biocneighbors
r-biocparallel
r-biocsingular
r-biocstyle
r-biom-utils
r-biomart
r-biomartr
New package: r-biomartr ( #14812 )
2020-02-10 11:08:04 +01:00
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bmp
New package: r-imager ( #14866 )
2020-02-10 10:44:00 +01:00
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bsgenome-hsapiens-ucsc-hg19
New package: r-codex ( #14869 )
2020-02-13 20:00:39 -06:00
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-cardata
r-caret
r-caroline
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-clisymbols
r-clue
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-codex
New package: r-codex ( #14869 )
2020-02-13 20:00:39 -06:00
r-coin
r-colorspace
r-combinat
r-commonmark
r-complexheatmap
r-compositions
r-condop
r-construct
r-convevol
r-copula
New package: r-copula ( #14874 )
2020-02-10 10:40:47 +01:00
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-ctc
r-cubature
r-cubist
r-curl
New package: r-biomartr ( #14812 )
2020-02-10 11:08:04 +01:00
r-dada2
r-data-table
r-dbi
New package - r-rmariadb ( #14762 )
2020-02-09 19:26:31 -06:00
r-dbplyr
r-debugme
r-delayedarray
r-delayedmatrixstats
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-dosnow
r-dotcall64
r-downloader
r-dplyr
r-dqrng
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-earth
r-ecp
r-edger
r-ellipse
r-ellipsis
r-emmli
r-energy
r-enrichplot
r-ensembldb
r-ergm
r-europepmc
r-evaluate
r-evd
r-evd: new package at 2.3-3
2020-02-07 14:51:24 -08:00
r-exomecopy
New package: r-exomecopy ( #14885 )
2020-02-13 19:51:18 -06:00
r-exomedepth
New package: r-exomedepth ( #14884 )
2020-02-13 19:52:43 -06:00
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
r-farver
r-fastcluster
r-fastmatch
r-fdb-infiniummethylation-hg18
New package: r-fdb-infiniummethylation-hg18 ( #14890 )
2020-02-13 19:49:24 -06:00
r-fdb-infiniummethylation-hg19
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-ff
r-fftwtools
r-fgsea
r-fields
r-filehash
r-findpython
r-fit-models
r-fitdistrplus
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-fs
r-futile-logger
r-futile-options
r-future
r-future-apply
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gbrd
r-gcrma
r-gdalutils
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-genemeta
r-geneplotter
r-generics
r-genetics
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geonames
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbeeswarm
r-ggbio
r-ggdendro
r-ggforce
r-ggjoy
r-ggmap
r-ggplot2
r-ggplotify
r-ggpubr
r-ggraph
r-ggrepel
r-ggridges
r-ggsci
r-ggsignif
r-ggvis
r-gh
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-globals
r-glue
r-gmodels
r-gmp
r-go-db
r-gofuncr
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gower
r-gplots
r-graph
r-graphlayouts
r-grbase
r-gridbase
r-gridextra
r-gridgraphics
r-gsa
r-gsalib
New package: r-gsalib ( #14873 )
2020-02-10 10:38:44 +01:00
r-gseabase
r-gsl
New package: r-copula ( #14874 )
2020-02-10 10:40:47 +01:00
r-gss
r-gstat
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel
r-haven
r-hdf5array
r-hdf5r
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminahumanmethylation450kanno-ilmn12-hg19
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-illuminaio
r-imager
New package: r-imager ( #14866 )
2020-02-10 10:44:00 +01:00
r-impute
r-influencer
r-ini
r-inline
r-interactivedisplaybase
r-intervals
r-inum
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-later
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-ldheatmap
r-leaflet
r-leaps
r-learnbayes
r-leiden
r-lhs
r-libcoin
r-limma
r-listenv
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-lpsolve
r-lsei
r-lubridate
r-lumi
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-magic
r-magick
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
[r-manipulatewidget] added versions ( #14674 )
2020-01-30 02:26:48 -08:00
r-mapplots
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-mass: Add version '7.3-51.5' and fix checksum. ( #14439 )
2020-01-13 21:06:44 -06:00
r-matr
r-matrix
r-matrixmodels
r-matrixstats
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-metap
r-methylumi
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mitools
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nlme
r-nloptr
r-nmf
r-nmof
r-nnet
r-nnls
r-nor1mix
r-nortest
r-np
r-npsurv
r-numderiv
r-oligoclasses
r-openssl
r-openxlsx
r-optparse
r-ordinal
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-philentropy
New package: r-biomartr ( #14812 )
2020-02-10 11:08:04 +01:00
r-phyloseq
r-phylostratr
r-phytools
r-picante
r-pillar
r-pkgbuild
r-pkgconfig
r-pkgload
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotmo
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-polyclip
r-polynom
r-popgenome
r-popvar
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-proj
New package: r-proj ( #14872 )
2020-02-10 10:43:27 +01:00
r-proj4
New package: r-proj4 ( #14871 )
2020-02-10 10:42:32 +01:00
r-promises
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-pscbs
New package: r-pscbs ( #14867 )
2020-02-10 10:41:56 +01:00
r-pspline
New package: r-copula ( #14874 )
2020-02-10 10:40:47 +01:00
r-psych
r-ptw
r-purrr
r-qtl
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-r-cache
New package: r-pscbs ( #14867 )
2020-02-10 10:41:56 +01:00
r-r-methodss3
r-r-oo
New package: r-pscbs ( #14867 )
2020-02-10 10:41:56 +01:00
r-r-utils
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-ranger
r-rann
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcmdcheck
r-rcolorbrewer
r-rcpp
r-rcppannoy
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcpphnsw
r-rcppparallel
r-rcppprogress
r-rcurl
r-rda
r-rdpack
r-readbitmap
package r-readbitmap Change jpeg dependency ( #15004 )
2020-02-15 21:50:54 -06:00
r-readr
r-readxl
r-recipes
r-registry
r-rematch
r-remotes
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-reticulate
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgexf
r-rgl
[r-rgl] added version 0.100.19 ( #14675 )
2020-01-30 02:26:24 -08:00
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhdf5lib
r-rhmmer
r-rhtslib
Update and fix the r-rhtslib package ( #14863 )
2020-02-13 19:47:37 -06:00
r-rinside
r-rio
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmariadb
New package - r-rmariadb ( #14762 )
2020-02-09 19:26:31 -06:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmutil
r-rmysql
r-rnaseqmap
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-roc
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-rocr
r-rodbc
r-rook
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools
Update and fix the r-rhtslib package ( #14863 )
2020-02-13 19:47:37 -06:00
r-rsnns
r-rsolnp
r-rspectra
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rsvd
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scater
r-scatterplot3d
r-scrime
r-sctransform
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-sessioninfo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shinyfiles
r-shortread
r-siggenes
r-simpleaffy
r-singlecellexperiment
r-sitmo
r-sm
r-smoof
r-sn
r-snakecase
r-snow
r-snowfall
r-snprelate
r-snpstats
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime
r-spam
r-sparsem
r-spatial
r-spatialreg
r-spdata
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squarem
r-squash
r-sseq
r-stabledist
New package: r-copula ( #14874 )
2020-02-10 10:40:47 +01:00
r-stanheaders
r-stargazer
r-stargazer: new package at 5.2.2
2020-02-07 14:50:32 -08:00
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-suppdists
New package: r-suppdists ( #14865 )
2020-02-10 10:44:17 +01:00
r-survey
r-survival
r-sva
r-sys
r-tarifx
r-taxizedb
r-tclust
r-teachingdemos
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidygraph
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tinytex
r-tmixclust
r-topgo
r-triebeard
r-trimcluster
r-truncdist
r-truncdist: new package at 1.0-2
2020-02-11 16:52:51 -08:00
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-tweenr
r-txdb-hsapiens-ucsc-hg18-knowngene
New package: r-fdb-infiniummethylation-hg18 ( #14890 )
2020-02-13 19:49:24 -06:00
r-txdb-hsapiens-ucsc-hg19-knowngene
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-tximport
r-ucminf
r-udunits2
r-units
r-upsetr
r-urca
r-urltools
r-usethis
r-utf8
r-uuid
r-uwot
r-variantannotation
r-varselrf
r-vcd
r-vctrs
r-vegan
r-vfs
r-vgam
r-vioplot
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-watermelon
New package: r-watermelon ( #14864 )
2020-02-10 10:49:34 +01:00
r-webshot
r-wgcna
r-whisker
r-withr
r-xde
r-xfun
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xopen
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zeallot
r-zip
r-zlibbioc
r-zoo
rabbitmq
racon
racon: support aarch64 and fix install error ( #14529 )
2020-01-28 15:12:40 -06:00
raft
ragel
raja
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone
rclone: added new versions up to v1.51.0 ( #14822 )
2020-02-07 13:23:00 +01:00
rdma-core
rdp-classifier
rdptools
re2c
readfq
readline
recon
recordproto
redis
redset
redundans
reframe
New package: ReFrame ( #14737 )
2020-02-11 17:51:26 -08:00
regcm
relax
relion
rempi
rename
rendercheck
renderproto
repeatmasker
Change encoding for scripts in repeatmasker ( #14358 )
2020-01-15 11:31:51 -06:00
repeatmodeler
repeatscout
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rnaz
rngstreams
rocketmq
add new package : rocketmq ( #14442 )
2020-01-14 11:59:40 -06:00
rocksdb
Update RocksDB to current version ( #14524 )
2020-01-15 18:50:24 -06:00
rockstar
rodinia
root
Update davix versions and add version restriction for ROOT ( #15038 )
2020-02-18 09:31:59 -06:00
rose
ross
ROSS: v7.2.0 and branches to match ( #15052 )
2020-02-18 14:25:37 -06:00
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
[rsync] Use popt and zlib ( #14755 )
2020-02-13 19:55:41 -06:00
rt-tests
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
[rust] added version 1.41.0 ( #14742 )
2020-02-04 15:11:36 -06:00
rust-bindgen
sabre
saga-gis
sailfish
salmon
sambamba
samblaster
samrai
samtools
Update and fix samtools ( #14507 )
2020-01-21 15:24:39 -06:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scala: added v2.12.10 and v2.13.1 ( #14823 )
2020-02-07 13:21:15 +01:00
scalasca
scallop
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
scs
sctk
sdl2
sdl2-image
sdsl-lite
seacas
sed
sensei
sentieon-genomics
seqan
seqkit
seqprep
seqtk
serf
sessreg
setxkbmap
sfcgal
sga
shadow
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
Patch silo for %clang@9 ( #14892 )
2020-02-13 19:45:55 -06:00
simgrid
simmetrix-simmodsuite
simplemoc
simul
simulationio
simulationio: Correct HDF5 dependency bounds ( #14626 )
2020-01-26 17:22:43 -06:00
singularity
singularity-legacy
sirius
skilion-onedrive
skopeo
skopeo: added v0.1.40 ( #14824 )
2020-02-07 13:30:44 +01:00
sl
slate
slate needs mercurial for build ( #15055 )
2020-02-18 15:26:31 -08:00
sleef
slepc
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soapdenovo2
soapdenovo-trans
sofa-c
sollve
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spfft
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squashfs
squashfs: added v4.4 ( #14825 )
2020-02-07 13:19:09 +01:00
squid
sratoolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
storm
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread
Update package.py ( #14784 )
2020-02-06 09:18:16 -06:00
subversion
suite-sparse
suite-sparse: add 5.4.0, 5.5.0, and 5.6.0, GitHub releases ( #14547 )
2020-01-17 13:04:53 -06:00
sumaclust
sundials
superlu
superlu-dist
superlu-dist: enforce OpenMP=OFF ( #14708 )
2020-01-31 13:35:46 -06:00
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swftools
swiftsim
swig
swipl
symengine
Update package: SymEngine 0.5.0 ( #14722 )
2020-02-02 09:25:51 -06:00
sympol
sysstat
sz
tabix
tajo
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau
Added new default tau version: 2.29. Added explicit zlib build requir… ( #15010 )
2020-02-17 17:19:48 -06:00
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
teckit
tecplot
templight
templight-tools
tensorflow-serving-client
tensorflow-serving-client: add new version 2.1.0 ( #14786 )
2020-02-06 12:20:55 -06:00
tetgen
tethex
texinfo
texlive
Rework texlive package to install from source ( #14332 )
2020-01-15 11:35:07 -06:00
texstudio
textparser
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrift: added v0.12.0 and v0.13.0 ( #14831 )
2020-02-07 13:14:16 +01:00
thrust
tig
time
timemory
tinker
tinyxml
tinyxml2
tioga
tippecanoe
tix
tk
tldd
tmalign
tmhmm
tmux
tmuxinator
tomcat
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity
trinotate
trnascan-se
trnascan-se: add and configure infernal dependency ( #14502 )
2020-01-14 17:47:48 -06:00
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
ucx
Adds MPI_THREAD_MULTIPLE support for OpenMPI to the variant with UCX fabrics ( #14194 )
2020-01-15 12:31:18 -06:00
udunits
ufo-core
ufo-filters
umap
umoci
umpire
unblur
uncrustify
unibilium
unifdef
unifdef: added new package ( #14880 )
2020-02-11 10:03:44 +01:00
unifyfs
unifyfs: remove numa dependency ( #14925 )
2020-02-13 19:28:33 -06:00
unison
units
unittest-cpp
unixodbc
unrar
unuran
unzip
upcxx
upcxx depends on python 2 >= 2.7.5 ( #14462 )
2020-01-14 11:53:38 -06:00
uriparser
usearch
utf8proc
util-linux
util-macros
uuid
uvw
valgrind
vampirtrace
vardictjava
variorum
new package: variorum ( #13624 )
2020-01-14 12:01:01 -08:00
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
veloc
velvet
verilator
verrou
verrou: Add support for verrou v2.2.0 ( #14480 )
2020-01-13 21:23:08 -06:00
vesta
videoproto
viennarna
viewres
vigra
vim
Fix vim build with ^ncurses+termlib
2020-02-10 10:25:35 -08:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-csg-tutorials
votca-csgapps
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk
Get vtk-8.2.0 to build ( #14562 )
2020-01-25 12:44:51 -06:00
vtk-h
vtk-m
wannier90
warpx
WarpX: master is the new develop ( #14898 )
2020-02-11 20:47:50 -08:00
watch
wcslib
wget
wgsim
which
windowswmproto
wireshark
wireshark: added new versions up to v3.2.1 ( #14828 )
2020-02-07 13:18:29 +01:00
wordnet
workrave
wt
wtdbg2
wxpropgrid
wxwidgets
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdmf3
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
Added xsbench@19 to Version List ( #14668 )
2020-01-29 13:24:03 -06:00
xscope
xsd
xsdk
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xssp
xstdcmap
xtensor
xtensor-python
xterm
xterm: added versions up to v353 ( #14829 )
2020-02-10 09:44:50 +01:00
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
Add version 0.6.3 of yaml-cpp.
2020-01-24 15:26:33 -08:00
yara
yasm
yorick
z3
configure z3+python to build python libraries in its own prefix ( #14604 )
2020-01-24 21:16:48 -08:00
zfp
zip
zlib
zoltan
zookeeper
zsh
zstd
zziplib
