1701e929bc
* py-pyseer: Added package py-pyseer and dependency py-glmnet-python * py-glmnet-python: Updated homepage, and added comments * Update copyrights --------- Co-authored-by: Jen Herting <jen@herting.cc> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
32 lines
1.2 KiB
Python
32 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyPyseer(PythonPackage):
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"""Sequence Elements Enrichment Analysis (SEER), python implementation"""
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homepage = "https://pyseer.readthedocs.io/en/master/"
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# Not availible on PyPI
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url = "https://github.com/mgalardini/pyseer/releases/download/1.3.11/pyseer-1.3.11.tar.gz"
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version("1.3.11", sha256="384313a3a14b92f873eaad53f77a319d90b584b9253785a7ca1dfc7d9220c91e")
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depends_on("py-setuptools", type="build")
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depends_on("py-numpy", type=("build", "run"))
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depends_on("py-scipy", type=("build", "run"))
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depends_on("py-pandas", type=("build", "run"))
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depends_on("py-statsmodels@0.10.0:", type=("build", "run"))
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depends_on("py-scikit-learn", type=("build", "run"))
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depends_on("py-pysam", type=("build", "run"))
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depends_on("py-dendropy", type=("build", "run"))
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depends_on("py-matplotlib", type=("build", "run"))
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depends_on("py-pybedtools", type=("build", "run"))
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depends_on("py-tqdm", type=("build", "run"))
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depends_on("py-glmnet-python@1.0.2", type=("build", "run"))
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