46 lines
2.1 KiB
Python
46 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RAdsplit(RPackage):
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"""This package implements clustering of microarray gene expression
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profiles according to functional annotations. For each term genes
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are annotated to, splits into two subclasses are computed and a
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significance of the supporting gene set is determined."""
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homepage = "https://www.bioconductor.org/packages/adSplit/"
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url = "https://git.bioconductor.org/packages/adSplit"
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version('1.46.0', git='https://git.bioconductor.org/packages/adSplit', commit='7e81a83f34d371447f491b3a146bf6851e260c7c')
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depends_on('r@3.4.0:3.4.9', when='@1.46.0')
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-cluster', type=('build', 'run'))
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depends_on('r-go-db', type=('build', 'run'))
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depends_on('r-kegg-db', type=('build', 'run'))
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depends_on('r-multtest', type=('build', 'run'))
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