36 lines
1.2 KiB
Python
36 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack.package import *
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class Anicalculator(Package):
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"""This tool will calculate the bidirectional average nucleotide identity
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(gANI) and Alignment Fraction (AF) between two genomes.
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Note: A manual download is required for ANIcalculator.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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https://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "https://ani.jgi.doe.gov/html/download.php?"
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url = f"file://{os.getcwd()}/ANIcalculator_v1.tgz"
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manual_download = True
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version("1", sha256="236596a9a204cbcad162fc66be3506b2530b1f48f4f84d9647ccec3ca7483a43")
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depends_on("perl@5:", type="run")
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conflicts("platform=darwin", msg="ANIcalculator requires Linux")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install("ANIcalculator", prefix.bin)
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install("nsimscan", prefix.bin)
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install_tree("Log", prefix.bin.Log)
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