7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
39 lines
1.3 KiB
Python
39 lines
1.3 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class Sniffles(CMakePackage):
|
|
"""Structural variation caller using third generation sequencing."""
|
|
|
|
homepage = "https://github.com/fritzsedlazeck/Sniffles/wiki"
|
|
url = "https://github.com/fritzsedlazeck/Sniffles/archive/v1.0.5.tar.gz"
|
|
|
|
license("MIT")
|
|
|
|
version("1.0.7", sha256="03fa703873bdf9c32055c584448e1eece45f94b4bc68e60c9624cf3841e6d8a9")
|
|
version("1.0.5", sha256="386c6536bdaa4637579e235bac48444c08297337c490652d1e165accd34b258f")
|
|
|
|
depends_on("c", type="build") # generated
|
|
depends_on("cxx", type="build") # generated
|
|
|
|
depends_on("zlib-api", type="link")
|
|
depends_on("bamtools", type="link")
|
|
|
|
patch("unused_libs.patch")
|
|
|
|
def cmake_args(self):
|
|
i = self.spec["bamtools"].prefix.include.bamtools
|
|
return ["-DCMAKE_CXX_FLAGS=-I{0}".format(i)]
|
|
|
|
# the build process doesn't actually install anything, do it by hand
|
|
def install(self, spec, prefix):
|
|
mkdir(prefix.bin)
|
|
src = "bin/sniffles-core-{0}".format(spec.version.dotted)
|
|
binaries = ["sniffles", "sniffles-debug"]
|
|
for b in binaries:
|
|
install(join_path(src, b), join_path(prefix.bin, b))
|