Adam J. Stewart a1572bb999 Add top-level attributes for git R (Bioconductor) packages		2018-07-25 23:10:10 -07:00
..
abinit
abyss
accfft	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ack
activeharmony
adept-utils
adios	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
adios2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
adlbx
adol-c	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
aegean
albany	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
alsa-lib
amg	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
amg2013
amp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ampliconnoise
amrex	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
amrvis	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
andi
angsd
ant
antlr
ants
ape
apex
applewmproto
appres
apr
apr-util
aragorn
archer
argp-standalone
argtable
arlecore
armadillo
arpack-ng	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
arrow	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00
ascent	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
asciidoc
aspa	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
aspcud
aspect	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
aspell	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
aspell6-de
aspell6-en
aspell6-es
aspera-cli	aspera-cli: a new package. (#8715)	2018-07-16 13:53:23 -05:00
assimp
astra
astral
astyle
atk
atlas
atom-dft
atompaw
atop
augustus	Augustus updated to version 3.3.1 (#8588)	2018-07-22 17:11:37 -05:00
autoconf
autodock-vina
autogen
automaded
automake
axel
axl	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bamtools
bamutil
barrnap
bash
bash-completion	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bats
bazel
bbcp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1	beast1: add libbeagle support (#8525)	2018-07-22 17:17:03 -05:00
beast2
bedops
bedtools2
beforelight
benchmark	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biopieces	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bismark
bison	style: make core comply with pep8-naming	2018-07-19 00:41:36 -07:00
bitmap
blasr	blasr: new package (#8367)	2018-07-07 10:05:57 -05:00
blasr-libcpp
blast-plus
blat
blaze
bliss
blitz
bmake
bml	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bohrium	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bookleaf-cpp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
boost	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib	Correcting position independent code setting for boxlib and amrex. (#8537)	2018-06-21 16:37:10 -05:00
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
breakdancer	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
breseq
brigand	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
bsseeker2
bucky
bumpversion
busco	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
butter
bwa	Remove unnecessary version-specific URL overrides (#8693)	2018-07-12 07:28:11 +02:00
bwtool	New packages: libbeato bwtool. (#8681)	2018-07-11 10:33:44 -05:00
byobu	byobu: update package (#8628)	2018-07-02 15:17:39 -05:00
bzip2
c-blosc
c-lime
caffe
cairo
cairomm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
caliper	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
callpath
camellia	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
candle-benchmarks
cantera
canu
cap3
cares	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cask
casper
catalyst
catch
cbench
cblas
cbtf	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cbtf-argonavis	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cbtf-argonavis-gui	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cbtf-krell	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cbtf-lanl	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ccache
cctools
cdbfasta	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cdd
cddlib
cdhit
cdo
ceed	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
cereal
ceres-solver	votca*: update dependencies (#8757)	2018-07-19 11:06:16 -05:00
cfitsio	Add CFITSIO 3.450 (#8602)	2018-06-28 11:28:22 -05:00
cgal
cgm
cgns
charliecloud	Added latest version of charliecloud (#8792)	2018-07-26 06:54:09 +02:00
charm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
check
chlorop
chombo	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cistem
cityhash	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
clamr	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
clapack
cleaveland4
cleverleaf	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
clfft
clhep
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	Cmake: add version 3.12.0 (#8731)	2018-07-17 17:56:04 -05:00
cmocka
cmor
cnmem	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cnpy	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cntk	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cntk1bitsgd	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
codar-cheetah	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
coevp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cohmm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
coinhsl
colm
colordiff
comd	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
compiz
compositeproto
conduit	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
constype
converge
coreutils	coreutils: add version 8.29	2018-06-24 16:39:04 -07:00
corset
cosmomc
cosp2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cp2k
cppad	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cppcheck
cpprestsdk
cppunit
cppzmq	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cpu-features	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cpuinfo	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cuda
cuda-memtest	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damselfly	tests: add checks and tests for consistent version() arguments	2018-07-25 23:10:10 -07:00
darshan-runtime
darshan-util
dash
datamash
dataspaces	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
davix
dbus
dealii	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
dealii-parameter-gui	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
deconseq-standalone
dejagnu
delly2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
denovogear
dia
dialign-tx
diamond
diffsplice
direnv
discovar
discovardenovo
dislin	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
dlpack	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
dmlc-core	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ea-utils
easybuild
ebms	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
eccodes
eclipse-gcj-parser
ecp-proxy-apps
ed
editres
eigen
elasticsearch
elemental	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
elfutils
elk
elpa	elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512)	2018-06-22 07:52:40 -05:00
emacs
emboss
encodings
environment-modules
eospac
er	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
es
esmf
essl
ethminer
etsf-io
everytrace	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
everytrace-example	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
evieext
exabayes
examinimd	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
exampm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
exasp2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
exmcutils
exodusii	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
exonerate
expat
expect
express	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
extrae
exuberant-ctags
f90cache
fabtests
falcon	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
farmhash	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fast-gbs	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fasttree
fastx-toolkit
fenics
fermi
fermikit	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fermisciencetools
ferret
ffmpeg
fftw	fftw: version bump (#8723)	2018-07-17 11:11:19 -05:00
fimpute
findutils
fio
fish
fixesproto
flac
flang	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
flann
flash
flatbuffers	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00
flecsale	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
flecsi	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
flex
flint	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
flit
fltk
flux	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fluxbox
fmt
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fpc
fr-hit
freebayes	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
freeglut
freetype
fseq
fsl
fslsfonts
fstobdf
ftgl
funhpc	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
fyba
gapbs
gapcloser
gapfiller
gasnet
gatk
gaussian
gawk
gblocks
gcc	style: make core comply with pep8-naming	2018-07-19 00:41:36 -07:00
gccmakedep
gccxml	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gconf
gcta
gdal	Fix GDAL Python bindings and add import tests (#8482)	2018-06-15 10:14:50 -05:00
gdb
gdbm
gdk-pixbuf
gdl
geant4
gearshifft
gemmlowp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
genemark-et
genomefinisher
genometools
geopm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
geos
gettext
gflags
ghost	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ghostscript
ghostscript-fonts
giflib
git	Fix digests for git@2.17.0 and git@2.17.1 (#8652)	2018-07-06 14:57:45 -05:00
git-imerge
git-lfs	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gl2ps
glew
glfmultiples
glib	glib: Update to 2.56.1 (#8523)	2018-06-20 11:20:04 -05:00
glibmm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
glimmer
glm
global
globalarrays
globus-toolkit
glog	Glog: make is a function (#8648)	2018-07-06 07:15:47 -05:00
gloo	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
glpk
glproto
glvis	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gmake
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest
gotcha	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gource
gperf
gperftools
gplates
grackle
gradle	Bump gradle to 4.8.1. (#8625)	2018-07-02 12:46:46 -05:00
grandr
graph500
graphicsmagick
graphlib
graphmap	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
graphviz	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
grass	Package/grass (#8505)	2018-06-22 18:03:05 -05:00
grib-api
groff
gromacs	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gsl
gslib	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gtkmm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
gtkorvo-atl	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gtkorvo-cercs-env	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gtkorvo-dill	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
gtkorvo-enet	Gtkorvo updates (#8663)	2018-07-10 12:50:10 -05:00
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hacckernels	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hadoop
hapcut2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hapdip	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
haploview
harfbuzz
harminv
hdf
hdf5
hdf5-blosc	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
help2man
hepmc
heppdt
hic-pro	HiC-pro depends on python+ucs4. (#8564)	2018-06-25 12:04:00 -05:00
highfive
highwayhash	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hiop	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hisat2
hisea
hmmer
hoomd-blue	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hpccg
hpctoolkit	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hpctoolkit-externals	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hpgmg	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hunspell
hwloc
hybpiper
hydra
hydrogen	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
hypre	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
i3
ibmisc
iceauth
icedtea
icet	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
ico
icu4c
id3lib
idba
igraph
igv
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-tbb
intel-xed	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
intltool
ior
iozone
iperf2	Packaged iperf2 (#8765)	2018-07-19 17:55:06 -05:00
iperf3	Packaged iperf3 (#8762)	2018-07-19 16:02:55 -05:00
ipopt
isaac	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
isaac-server	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
isl
itstool
itsx
jags
jansson
jasper
jbigkit
jchronoss
jdk
jellyfish	Remove unnecessary version-specific URL overrides (#8693)	2018-07-12 07:28:11 +02:00
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
k8
kahip	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kaiju
kaks-calculator
kaldi	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kallisto
kbproto
kdiff3
kealib	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kentutils	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kmergenie
kokkos	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kraken
krb5
krims	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kripke
kvasir-mpl	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
kvtree	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
laghos	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lammps	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
last
latte	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
launchmon
lazyten	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lbann	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle	libbeagle: add java dependency so jni hooks get built (#8524)	2018-07-22 17:16:43 -05:00
libbeato	New packages: libbeato bwtool. (#8681)	2018-07-11 10:33:44 -05:00
libbsd
libbson
libcanberra
libcap
libceed	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libevent
libevpath	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libfabric
libffi
libffs	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval	fix to build libmatheval with guile@2.0: (#8680)	2018-07-22 17:07:44 -05:00
libmaxminddb
libmesh
libmng
libmongoc
libmonitor	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libnbc
libnl
libnova	libnova: new package (#8666)	2018-07-09 16:16:09 -05:00
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
librom	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libshm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libsigcpp	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
libsigsegv
libsm
libsodium
libspatialindex
libsplash	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libssh
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence	libxshmfence: Update to 1.3 (#8667)	2018-07-10 07:58:44 -05:00
libxslt
libxsmm	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	Add newer likwid versions 4.3.1 and 4.3.2 (#8488)	2018-06-15 10:14:00 -05:00
linkphase3	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
linux-headers
listres
llvm
llvm-openmp-ompt	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lmdb
lmod
lndir
log4cplus	Add new versions for log4cplus. (#8621)	2018-07-03 10:08:22 -05:00
log4cxx
loki
lordec
lrslib
lrzip	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
lz4
lzma
lzo
m4	Fix m4 on OS X highsierra (#8559)	2018-06-23 20:34:04 -05:00
macsio	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mad-numdiff	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mafft
magics
magma
makedepend
mallocmc	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
man-db
manta
maq
mariadb
masa	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
masurca
matio
matlab	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
maven
maverick
mawk
mbedtls
mc
mcl
mdtest	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
med	add MoFEM packages (#8700)	2018-07-22 15:26:30 -05:00
meep
mefit	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
megahit
memaxes
meme
memkind
meraculous	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mercurial
mesa	New version mesa-18.1.2 (#8589)	2018-06-27 14:57:55 -05:00
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metasv
metis	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
mfem	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
microbiomeutil
minced
mindthegap	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
miniaero	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
miniamr
miniasm	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minixyce
minuit	Added minuit package (#8536)	2018-06-22 11:27:25 -05:00
mira
mirdeep2
mitofates	mitofates: more deps and a patch to make it functional (#8686)	2018-07-12 10:23:22 +02:00
mitos	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mkfontdir
mkfontscale
mlhka	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
moab	add necessary dependence on lapacak, and fix ld_flags for blas (#8776)	2018-07-22 16:32:47 -05:00
modern-wheel
mofem-cephas	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mofem-fracture-module	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mofem-minimal-surface-equation	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mofem-users-modules	add MoFEM packages (#8700)	2018-07-22 15:26:30 -05:00
molcas
mono
mosh
mothur	mothur: mpi not used (#8706)	2018-07-13 20:31:25 -05:00
motif
motioncor2
mozjs
mpark-variant
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mpifileutils	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mpilander	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mpileaks
mpip
mpir	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mpix-launch-swift	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mrbayes	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mrnet	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mrtrix3	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mscgen
msgpack-c
mshadow	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
multitail
multiverso	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2	Unset F90 and F90FLAGS in mvapich2 (#8698)	2018-07-13 20:32:02 -05:00
mxml
mxnet
nag
nalu	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nalu-wind	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
namd
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast	New package ncbi-magicblast (#8517)	2018-06-22 17:48:32 -05:00
ncbi-rmblastn
ncbi-toolkit	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
nccl
nccmp
ncdu
ncftp
ncl	Ncl update (#8747)	2018-07-22 16:54:06 -05:00
nco
ncurses
ncview
ndiff
nek5000	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nekbone	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nekcem	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nektar
neovim
netcdf	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack	Patch for 'netlib-lapack'. (#8677)	2018-07-11 08:52:21 -05:00
netlib-scalapack
netlib-xblas
nettle	Update nettle package with info for v3.4 (#8653)	2018-07-06 14:57:32 -05:00
neuron	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nmap	Added nmap version 7.70 (#8606)	2018-06-28 15:32:43 -05:00
nnvm	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
node-js
notmuch
npb
npm
npth
nspr
numactl	numactl: fix build with glibc-2.26 (#8615)	2018-06-29 14:41:52 -05:00
numdiff
nut	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
nwchem	nwchem: add link type to python dep (#8759)	2018-07-19 12:03:40 -05:00
ocaml
occa	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
oce	style: make core comply with pep8-naming	2018-07-19 00:41:36 -07:00
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
of-precice	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
omega-h	omega-h: fix -std=c++11 build error (#8543)	2018-06-23 07:25:33 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore	added albacore version 2.3.1 (#8513)	2018-06-19 11:16:41 -05:00
opa-psm2
opam
opari2
openbabel
openblas	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
opencoarrays
opencv	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
openexr
openfast	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openfoam-com	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openfoam-org	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openfst
opengl
openglu
openjpeg
openmc	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openmpi	openmpi: add c++ exceptions cfg option variant (#8743)	2018-07-18 14:54:12 -05:00
opennurbs	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openpmd-api	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openscenegraph
openslide
openspeedshop	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openspeedshop-utils	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
openssh
openssl	openssl: add new version 1.0.2o (#8486)	2018-06-15 09:54:52 +02:00
opium
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pacbio-damasker	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pacbio-dazz-db	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pacbio-dextractor	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pagit
pagmo
paml
panda
pandaseq
pango
pangomm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
papi
papyrus	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
paradiseo	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
parallel
parallel-netcdf
paraver
paraview
parmetis
parmgridgen
parquet	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00
parsimonator	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
parsplice	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt	Add new versions for TAU and PDT package (#8497)	2018-06-17 17:21:00 -05:00
pegtl	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pennant
percept	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
perl	Make read only source file writeable in perl before patch to avoid failures on lustre filesystem. (#8764)	2018-07-22 16:51:59 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-compress-raw-zlib	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-cephes	perl-math-cephes: new package (#8671)	2018-07-11 12:40:39 -05:00
perl-math-matrixreal
perl-module-build
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perlio-gzip
perl-perlio-utf8-strict
perl-soap-lite
perl-star-fusion	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pexsi
pfft
pflotran	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pfunit
pgdspider
pgi
pgmath	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
phantompeakqualtools
phast
phasta	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
phist	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
phylip
picard
pidx	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pigz
pilon
pindel
piranha	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pism	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pixman	Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449)	2018-06-22 08:03:47 -05:00
pkg-config
pkgconf
planck-likelihood	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
plasma	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
platypus	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
plink
plplot
plumed
pmgr-collective
pmix
pnfft
pngwriter	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pnmpi
poamsa
pocl	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
polymake
poppler	poppler needs it test repo URL updated (#8519)	2018-06-20 16:04:22 -05:00
poppler-data
porta
portage	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
postgresql
ppl
prank
precice	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
pruners-ninja
ps-lite	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
psi4
pslib
psm	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
psmc	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pstreams
pugixml
pumi	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
pv
pvm
pxz	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-3to2
py-4suite-xml
py-abipy
py-adios	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall	Add py-backcall (#8701)	2018-07-13 10:59:02 -05:00
py-backports-abc
py-backports-functools-lru-cache	Remove unnecessary version-specific URL overrides (#8693)	2018-07-12 07:28:11 +02:00
py-backports-shutil-get-terminal-size	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
py-backports-ssl-match-hostname	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-cheetah	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
py-click
py-cligj
py-cloudpickle
py-cnvkit
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt	py-cutadapt: needs py-setuptools at runtime (#8689)	2018-07-11 14:53:35 -05:00
py-cvxopt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-espressopp	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-flake8
py-flake8-polyfill	add py-pep8-naming package	2018-07-19 00:41:36 -07:00
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn	py-fn: new package (#8705)	2018-07-13 20:31:39 -05:00
py-fparser	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-funcsigs
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio	Add py-imageio for python3 (#8553)	2018-06-26 12:55:10 -05:00
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-lark-parser	Py-lark-parser: new package (#8761)	2018-07-19 14:00:19 -05:00
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazyarray
py-libconf
py-libensemble	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr	update version for numexpr (#8702)	2018-07-13 15:50:21 -05:00
py-numexpr3
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming	add py-pep8-naming package	2018-07-19 00:41:36 -07:00
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow	Updating py-pillow with change in checksum for version 5.1.0. (#8547)	2018-06-22 18:02:27 -05:00
py-pip
py-pipits
py-pkgconfig	py-pkgconfig: Made nose dependency type=build,test instead of just type=test, to prevent setuptools from silently installing its own copy of nose (#8749)	2018-07-18 21:42:04 -05:00
py-plotly
py-pluggy
py-ply	py-ply: added version 3.11 (#8383)	2018-07-11 22:21:55 +02:00
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-proj	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-projectq	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser	pycparser: add version 2.18 (#8760)	2018-07-19 12:49:05 -05:00
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pynn	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-pypar
py-pyparsing
py-pypeflow	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-pyprof2html
py-pyqi	py-pyqi: new package (#8726)	2018-07-17 16:07:38 -05:00
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial	Fix base class for py-pyserial (#8633)	2018-07-02 22:47:56 -05:00
py-pyshp
py-pyside
py-pysocks
py-pysqlite
py-pytables
py-pytest	py-pytest: Added dependency on py-setuptools-scm, as well as py-setup… (#8750)	2018-07-18 22:52:44 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-restview
py-rope
py-rpy2	added rpy2 2.9.4 and added py-jinja2 dependency (#8645)	2018-07-05 21:33:32 -05:00
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy	Remove unnecessary version-specific URL overrides (#8693)	2018-07-12 07:28:11 +02:00
py-seaborn
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs	py-snuggs: Added depends_on py-parsing. The build uses setuptools, which would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748)	2018-07-18 21:42:57 -05:00
py-spectra
py-spefile	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-testinfra
py-tetoolkit
py-theano	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
py-zmq
py-zope-event
py-zope-interface
python	Add Python 3.7.0 (#8619)	2018-06-29 16:25:39 -05:00
qbank
qbox
qhull
qmcpack	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
qmd-progress	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
qorts	r-qorts: Create new package. (#8744)	2018-07-19 17:58:36 -05:00
qrupdate
qt
qt-creator
qtgraph	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
qthreads
quantum-espresso
quinoa	Add top-level attributes for git M-P packages	2018-07-25 23:10:10 -07:00
qwt
r	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
r-a4	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-a4base	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-a4classif	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-a4core	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-a4preproc	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-a4reporting	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-abadata
r-abaenrichment	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-abind
r-absseq	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-acde
r-acepack
r-acgh	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-acme	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-aer	r-aer: a new package. (#8567)	2018-06-28 15:40:00 -05:00
r-affxparser	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affy	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affycomp	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affycompatible	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affycontam	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affycoretools	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affydata
r-affyexpress	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affyilm	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affyio	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affypdnn	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affyplm	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affyqcreport	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-affyrnadegradation	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-agdex	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-agilp	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-agimicrorna	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-aims	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-aldex2	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-allelicimbalance	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-alpine	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-als
r-alsace	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-altcdfenvs	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ampliqueso	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-analysispageserver	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-anaquin	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-aneufinder	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-aneufinderdata	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annaffy	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annotate	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annotationdbi	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annotationfilter	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annotationforge	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-annotationhub	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ape
r-assertthat
r-backports
r-bamsignals	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-base64
r-base64enc
r-bbmisc
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biocgenerics	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biocinstaller	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biocparallel	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biocstyle	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biom-utils
r-biomart	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biomformat	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biostrings	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-biovizbase	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-bumphunter	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-c50
r-callr
r-car
r-caret
r-category	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-catools
r-cdcfluview
r-cellranger
r-cghflasso
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-cner	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-deseq2	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-dismo
r-dnacopy	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-do-db
r-domc
r-doparallel
r-dorng
r-dose	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ellipse
r-ensembldb	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastmatch
r-ff
r-fftwtools
r-fgsea	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-filehash
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gdata
r-gdsfmt	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-geiger
r-genefilter	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-geneplotter	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-genie3	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-genomeinfodb	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-genomeinfodbdata
r-genomicalignments	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-genomicfeatures	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-genomicranges	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-geomorph
r-geoquery	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gostats	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gplots
r-graph	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gridbase
r-gridextra
r-gseabase	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-gviz	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ica
r-igraph
r-illuminaio	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-impute	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-influencer
r-inline
r-interactivedisplaybase	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-ipred
r-iranges	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-irdisplay
r-irkernel	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-keggrest	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-multcomp
r-multtest	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-munsell
r-mvtnorm
r-mzid	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-mzr	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-packrat
r-pacman
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-picante
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-prettyunits
r-proc
r-prodlim
r-progress
r-protgenerics	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-qvalue	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-rhdf5	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-siggenes	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-simpleaffy	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-som
r-somaticsignatures	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-sourcetools
r-sp
r-sparsem
r-spatial
r-spdep
r-speedglm
r-spem	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-splitstackshape
r-sqldf
r-squash
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-survey
r-survival
r-sva	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-topgo	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utf8
r-utils
r-uuid
r-variantannotation	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-whisker
r-withr
r-xde	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-xml
r-xml2
r-xtable
r-xts
r-xvector	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-yaml
r-yapsa	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-yaqcaffy	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-yarn	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-zlibbioc	Add top-level attributes for git R (Bioconductor) packages	2018-07-25 23:10:10 -07:00
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
rankstr	ECP VELOC (#8581)	2018-07-07 09:56:56 -05:00
rapidjson
ravel
raxml
ray
rdma-core
rdp-classifier
re2c
readfq
readline
recordproto
redset	ECP VELOC (#8581)	2018-07-07 09:56:56 -05:00
redundans
relion
rempi	added ReMPI version 1.1.0 (#8548)	2018-06-22 17:03:41 -05:00
rename
rendercheck
renderproto
repeatmasker
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab
rna-seqc
rngstreams
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby	Add url_for_version and list_url to Ruby package (#8216)	2018-07-06 07:22:38 -05:00
ruby-gnuplot
ruby-narray	tests: add checks and tests for consistent version() arguments	2018-07-25 23:10:10 -07:00
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
salmon
sambamba
samblaster
samrai	samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501)	2018-06-18 13:52:24 -05:00
samtools
sandbox
sas
satsuma2
savanna
saws
sbt	Bump sbt to 1.1.6. (#8634)	2018-07-03 10:03:49 -05:00
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch	Scotch: update package (#8711)	2018-07-15 15:54:28 -05:00
scr
screen	screen: update package (#8630)	2018-07-02 16:03:22 -05:00
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile	ECP VELOC (#8581)	2018-07-07 09:56:56 -05:00
sickle
siesta
signalp
signify
silo	silo: Make silo use AutotoolsPackage (#8551)	2018-06-22 17:19:03 -05:00
simplemoc
simul
simulationio
singularity	Fix security issue in singularity + misc cleanups (#8657)	2018-07-06 19:59:17 -05:00
sleef
slepc
slurm
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing	sowing: update to version used by current petsc -i.e 1.1.25-p1 (#8561)	2018-06-24 17:02:39 -05:00
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite
sqlitebrowser
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star	Remove unnecessary version-specific URL overrides (#8693)	2018-07-12 07:28:11 +02:00
star-ccm-plus
startup-notification
stat
stc
stow
strace
stream
strelka
stress
stringtie
structure
sublime-text	Adjusted sublime-text package (#8685)	2018-07-11 12:41:48 -05:00
subread
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist	superlu_dist: 'master' is branch - not tag (#8495)	2018-06-16 08:18:01 -05:00
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau	Add new versions for TAU and PDT package (#8497)	2018-06-17 17:21:00 -05:00
tcl
tcl-itcl	Add package tcl-itcl (#8578)	2018-06-27 10:05:00 -05:00
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
tcsh	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
tealeaf
tetgen
tethex
texinfo
texlive
the-platinum-searcher
the-silver-searcher
thrift	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00
thrust
tig
tinyxml
tinyxml2
tioga
tk
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
transabyss
transdecoder	transdecoder: needs perl-uri-escape (#8690)	2018-07-11 17:38:58 -05:00
transposome
transset
trapproto
tree
trf
triangle
trilinos	style: make core comply with pep8-naming	2018-07-19 00:41:36 -07:00
trimgalore
trimmomatic
trinity	Trinity plugins (#8516)	2018-07-22 17:17:44 -05:00
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon	Add Git development versions for Typhon and BookLeaf_Cpp. (#8694)	2018-07-12 07:37:42 -05:00
typhonio	Add fix for bug causing MACSio build failure when hdf5 or typhonio enabled (#8722)	2018-07-17 08:24:16 -05:00
uberftp
ucx
udunits2
ufo-core
ufo-filters
umpire
unblur
uncrustify	Added support for uncrustify 0.67. (#8655)	2018-07-06 19:59:34 -05:00
unibilium
unison
units
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
valgrind	use new valgrind repo (#8538)	2018-06-21 16:35:07 -05:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
veloc	ECP VELOC (#8581)	2018-07-07 09:56:56 -05:00
velvet
verilator	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
verrou	New package: Verrou, a floating point error checker (#8738)	2018-07-19 09:57:53 -05:00
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg	votca: add more deps (#8771)	2018-07-21 16:45:01 -05:00
votca-ctp	votca*: update dependencies (#8757)	2018-07-19 11:06:16 -05:00
votca-tools	votca: add more deps (#8771)	2018-07-21 16:45:01 -05:00
votca-xtp	votca*: update dependencies (#8757)	2018-07-19 11:06:16 -05:00
vpfft
vpic
vsearch
vt
vtk	style: bring packages in compliance with pep8-naming	2018-07-19 00:41:36 -07:00
vtkh
vtkm
wannier90
wcslib	Add missing dependencies and variants to wcslib (#8603)	2018-07-05 21:36:29 -05:00
wget
wgsim
windowswmproto
wireshark
workrave	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm	A new package: xhmm. (#8620)	2018-07-02 07:54:41 -05:00
xhost
xineramaproto
xinit
xinput
xios	Add top-level attributes for hg, svn, and git A-L packages	2018-07-25 23:10:10 -07:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsdk	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash	New package xxhash. (#8530)	2018-06-20 13:51:53 -05:00
xz
yajl
yambo
yaml-cpp
yasm	yasm: add develop version (#8712)	2018-07-15 15:54:13 -05:00
yorick
z3
zeromq	Bump ZeroMQ from v4.2.2 to v4.2.5 (#8514)	2018-06-20 16:33:17 +02:00
zfp
zip
zlib
zoltan	zoltan: depends on metis.h and libmetis (#8583)	2018-06-26 23:29:22 -07:00
zsh	packages: do not use generic checksum= in version() directives	2018-07-23 11:57:52 -07:00
zstd	Parquet: new packages (#8601)	2018-07-04 07:24:38 -05:00