50 lines
2.2 KiB
Python
50 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RBumphunter(RPackage):
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"""Tools for finding bumps in genomic data"""
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homepage = "http://bioconductor.org/packages/bumphunter/"
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git = "https://git.bioconductor.org/packages/bumphunter.git"
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version('1.16.0', commit='1c3ab4d1fd2d75b1586ccef12665960b3602080a')
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-genomeinfodb', type=('build', 'run'))
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-foreach', type=('build', 'run'))
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depends_on('r-iterators', type=('build', 'run'))
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depends_on('r-locfit', type=('build', 'run'))
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depends_on('r-matrixstats', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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depends_on('r-dorng', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-genomicfeatures', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@1.16.0')
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