a18a642074
* add mofem-cephas package * add mofem fracture module * add user modules build and fracture modyle * add minimal surface module * add slepc variant * bump mofem core lib version * bump mofem core lib version * bump version * fix bug * set upper bound to petsc version and other chanes * fix indentation * add minimal med file installation * chcekc with flake8 and installation with spack packages * add variants to med package * upper bound to adol-c and remove obsolete internal package install * fix basic module install * module install from external source in extended prefix * remove obsolte code and reverse to variant doxygen * fix git adress * improve packaging for mofem users modules * fix flake8 * move dependencies after variants * move root_cmakelists_dir right before cmake_args * remove unused variants * use append for single element * replace root_cmakelists_dir * use install_tree instead copy tree * simplify code * remove phase and mkdirp * add run tests * instal ext modules to ext_users_modules directory * move version below url * simplify directory name * use underscore in variant name * remove unused variable * fix link to blas libs * add missing boost dependence * fix problem with copying module source code * change variant name form doxygen to docs * add expanded description * make installation consistent with spack * fix flake8 * make extensions installed * code comments and minor corrections * make slepc variant false by default
157 lines
6.1 KiB
Python
157 lines
6.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class AdolC(AutotoolsPackage):
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"""A package for the automatic differentiation of first and higher
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derivatives of vector functions in C and C++ programs by operator
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overloading."""
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homepage = "https://projects.coin-or.org/ADOL-C"
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url = "http://www.coin-or.org/download/source/ADOL-C/ADOL-C-2.6.1.tgz"
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version('develop', git='https://gitlab.com/adol-c/adol-c.git',
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branch='master')
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version('2.6.3', 'f78f67f70d5874830a1ad1c0f54e54f7')
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version('2.6.2', '0f9547584c99c0673e4f81cf64e8d865')
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version('2.6.1', '1032b28427d6e399af4610e78c0f087b')
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version('2.5.2', '96f81b80e93cca57398066ea4afe28f0')
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variant('advanced_branching', default=False,
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description='Enable advanced branching to reduce retaping')
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variant('atrig_erf', default=True,
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description='Enable arc-trig and error functions')
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variant('doc', default=True, description='Install documentation')
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variant('openmp', default=False, description='Enable OpenMP support')
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variant('sparse', default=False, description='Enable sparse drivers')
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variant('examples', default=True, description='Install examples')
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variant('boost', default=False, description='Enable boost')
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# Build dependencies
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depends_on('automake', type='build', when='@develop')
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depends_on('autoconf', type='build', when='@develop')
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depends_on('libtool', type='build', when='@develop')
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depends_on('m4', type='build', when='@develop')
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# Link dependencies
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depends_on('boost+system', when='+boost')
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# FIXME: add
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# --with-colpack=DIR path to the colpack library and headers
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# [default=system libraries]
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# --with-mpi-root=MPIROOT absolute path to the MPI root directory
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# --with-mpicc=MPICC name of the MPI C++ compiler (default mpicc)
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# --with-mpicxx=MPICXX name of the MPI C++ compiler (default mpicxx)
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# --with-ampi=AMPI_DIR full path to the installation of adjoinable MPI
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# (AMPI)
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patch('openmp_exam_261.patch', when='@2.6.1')
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def configure_args(self):
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spec = self.spec
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configure_args = []
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if '+boost' in spec:
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configure_args.append(
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'--with-boost={0}'.format(spec['boost'].prefix)
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)
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else:
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configure_args.append(
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'--with-boost=no'
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)
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if '+advanced_branching' in spec:
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configure_args.append(
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'--enable-advanced-branching'
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)
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if '+atrig_erf' in spec:
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configure_args.append(
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'--enable-atrig-erf'
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)
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if '+openmp' in spec:
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configure_args.append(
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'--with-openmp-flag={0}'.format(self.compiler.openmp_flag)
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)
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if '+sparse' in spec:
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configure_args.append(
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'--enable-sparse'
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)
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# We can simply use the bundled examples to check
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# whether Adol-C works as expected
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if '+examples' in spec:
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configure_args.extend([
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'--enable-docexa', # Documented examples
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'--enable-addexa' # Additional examples
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])
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if '+openmp' in spec:
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configure_args.append(
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'--enable-parexa' # Parallel examples
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)
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return configure_args
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@run_after('install')
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def install_additional_files(self):
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spec = self.spec
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prefix = self.prefix
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# Copy the config.h file, as some packages might require it
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source_directory = self.stage.source_path
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config_h = join_path(source_directory, 'ADOL-C', 'src', 'config.h')
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install(config_h, join_path(prefix.include, 'adolc'))
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# Install documentation to {prefix}/share
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if '+doc' in spec:
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install_tree(join_path('ADOL-C', 'doc'),
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join_path(prefix.share, 'doc'))
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# Install examples to {prefix}/share
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if '+examples' in spec:
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install_tree(join_path('ADOL-C', 'examples'),
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join_path(prefix.share, 'examples'))
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# Run some examples that don't require user input
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# TODO: Check that bundled examples produce the correct results
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with working_dir(join_path(
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source_directory, 'ADOL-C', 'examples')):
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Executable('./tapeless_scalar')()
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Executable('./tapeless_vector')()
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with working_dir(join_path(
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source_directory,
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'ADOL-C', 'examples', 'additional_examples')):
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Executable('./checkpointing/checkpointing')()
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if '+openmp' in spec:
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with working_dir(join_path(
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source_directory,
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'ADOL-C', 'examples', 'additional_examples')):
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Executable('./checkpointing/checkpointing')()
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