spack/var/spack/repos/builtin/packages/r-lumi/package.py
Todd Gamblin 3118647802
Update copyright year to 2024 (#41919)
It was time to run `spack license update-copyright-year` again.
2024-01-02 09:21:30 +01:00

45 lines
2.1 KiB
Python

# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RLumi(RPackage):
"""BeadArray Specific Methods for Illumina Methylation and Expression
Microarrays.
The lumi package provides an integrated solution for the Illumina
microarray data analysis. It includes functions of Illumina BeadStudio
(GenomeStudio) data input, quality control, BeadArray-specific variance
stabilization, normalization and gene annotation at the probe level. It
also includes the functions of processing Illumina methylation microarrays,
especially Illumina Infinium methylation microarrays."""
bioc = "lumi"
version("2.52.0", commit="c6aa992a622dbaba4dae1b54c61835a37cce8e95")
version("2.50.0", commit="8711b77a1b5b0a58770d25d3d079ad02208704f5")
version("2.48.0", commit="1f988ffe04d2c0707b2202d2074d02b679a3204b")
version("2.46.0", commit="a68932c17a61c99e58ebbd8008d078bec6adb4e7")
version("2.42.0", commit="a643b3ba46fee951b8566ddd8216af7e6c92f6f6")
version("2.38.0", commit="321d480d44ce9a0c02ce5af1bddc1f549abdea59")
depends_on("r@2.10:", type=("build", "run"))
depends_on("r-biobase@2.5.5:", type=("build", "run"))
depends_on("r-affy@1.23.4:", type=("build", "run"))
depends_on("r-methylumi@2.3.2:", type=("build", "run"))
depends_on("r-genomicfeatures", type=("build", "run"))
depends_on("r-genomicranges", type=("build", "run"))
depends_on("r-annotate", type=("build", "run"))
depends_on("r-lattice", type=("build", "run"))
depends_on("r-mgcv@1.4-0:", type=("build", "run"))
depends_on("r-nleqslv", type=("build", "run"))
depends_on("r-kernsmooth", type=("build", "run"))
depends_on("r-preprocesscore", type=("build", "run"))
depends_on("r-rsqlite", type=("build", "run"))
depends_on("r-dbi", type=("build", "run"))
depends_on("r-annotationdbi", type=("build", "run"))
depends_on("r-mass", type=("build", "run"))