33 lines
1.5 KiB
Python
33 lines
1.5 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RLdheatmap(RPackage):
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"""Graphical Display of Pairwise Linkage Disequilibria Between SNPs
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Produces a graphical display, as a heat map, of measures of pairwise
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linkage disequilibria between single nucleotide polymorphisms (SNPs). Users
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may optionally include the physical locations or genetic map distances of
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each SNP on the plot. The methods are described in Shin et al. (2006)
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<doi:10.18637/jss.v016.c03>. Users should note that the imported package
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'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges',
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'GenomInfoDb' and 'IRanges' are all BioConductor packages
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<https://bioconductor.org>."""
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homepage = "https://sfustatgen.github.io/LDheatmap/"
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url = "https://cloud.r-project.org/src/contrib/LDheatmap_0.99-7.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/LDheatmap"
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version('1.0-4', sha256='07eb385f19e6a195e8e4d75be0b47c57744eabbf14045e527f0c27e1183ae5ca')
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version('0.99-7', sha256='aca54c839a424506d8be7153bf03b32026aeefe7ed38f534e8e19708e34212e4')
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depends_on('r@2.14.0:', type=('build', 'run'))
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depends_on('r@4.0:', when='@1.0-4:', type=('build', 'run'))
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depends_on('r-genetics', type=('build', 'run'))
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depends_on('r-snpstats', type=('build', 'run'))
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depends_on('r-rcpp', type=('build', 'run'))
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