40 lines
1.3 KiB
Python
40 lines
1.3 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Demuxlet(AutotoolsPackage):
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"""Genetic multiplexing of barcoded single cell RNA-seq"""
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homepage = "https://github.com/statgen/demuxlet"
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url = "https://github.com/statgen/demuxlet"
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git = "https://github.com/statgen/demuxlet.git"
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maintainers("snehring")
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license("Apache-2.0")
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version("20210211", commit="f5044eb9ed5c6678aa3a80a8f2be7db7748ee732")
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depends_on("cxx", type="build") # generated
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depends_on("autoconf", type="build")
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depends_on("automake", type="build")
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depends_on("libtool", type="build")
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depends_on("htslib@1.10")
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depends_on("libdeflate", when="^htslib+libdeflate")
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def patch(self):
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filter_file("-I ../../htslib/htslib", "", "Makefile.am", string=True)
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filter_file("-I ../htslib/", "", "Makefile.am", string=True)
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filter_file("../htslib/libhts.a", "-lhts", "Makefile.am", string=True)
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if self.spec.satisfies("^htslib+libdeflate"):
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filter_file("-lcrypto", "-lcrypto -ldeflate", "Makefile.am", string=True)
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def autoreconf(self, spec, prefix):
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which("autoreconf")("-vfi")
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