spack/var/spack/repos/builtin/packages/orthomcl/package.py
Tamara Dahlgren bafd84e191
Switch http to https where latter exists (#25672)
* Switch http to https where latter exists
* Hopefully restore original permissions
* Add URL updates after include the -L curl option
* Manual corrections to select URL format strings
2021-09-13 09:21:35 -07:00

31 lines
1014 B
Python

# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Orthomcl(Package):
"""OrthoMCL is a genome-scale algorithm for grouping orthologous protein
sequences."""
homepage = "https://orthomcl.org/orthomcl/"
url = "https://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz"
version('2.0.9', sha256='5f96d23ff255778535c4926d75b19f059db0c01be1ac599289d2431115d68640')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('mcl')
depends_on('mariadb')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('config', prefix.config)
install_tree('doc', prefix.doc)
install_tree('lib', prefix.lib)
def setup_run_environment(self, env):
env.prepend_path('PERL5LIB', self.prefix.lib)