86 lines
3.3 KiB
Python
86 lines
3.3 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Revbayes(CMakePackage):
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"""Bayesian phylogenetic inference using probabilistic graphical models
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and an interpreted language."""
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homepage = "https://revbayes.github.io"
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url = "https://github.com/revbayes/revbayes/archive/1.1.0.tar.gz"
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git = "https://github.com/revbayes/revbayes.git"
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version('develop', branch='development')
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version('1.1.1', sha256='d61293fceac817d8203ed1e828661d76c73fa16bf04458a50a37057e99fd40c0')
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version('1.1.0', sha256='a9f35178d8289d0dd32c9d936f6384f260e8e81e7b80a5155169064a24666012')
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version('1.0.13', sha256='e85e2e1fe182fe9f504900150d936a06d252a362c591b9d3d8272dd085aa85d9')
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version('1.0.12', sha256='80c926bb6b37288d02e36e07b44e4663841cd1fe541e2cc0b0e44c89ca929759')
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version('1.0.11', sha256='03052194baa220dde7e622a739f09f34393f67ea00a0b163b409d313d7fc7c02')
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version('1.0.10', sha256='6a3cf303e7224b0b32637bd8e2c3c2cf2621f5dbe599cd74ce4b0c215d0fcd2d')
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variant('mpi', default=True, description='Enable MPI parallel support')
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depends_on('boost')
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depends_on('mpi', when='+mpi')
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conflicts('%gcc@7.1.0:', when='@:1.0.12')
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def url_for_version(self, version):
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if version > Version('1.0.13'):
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return 'https://github.com/revbayes/revbayes/archive/{0}.tar.gz'.format(version)
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else:
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return 'https://github.com/revbayes/revbayes.archive/archive/v{0}.tar.gz'.format(version)
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@property
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def root_cmakelists_dir(self):
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if self.spec.version > Version('1.0.13'):
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return 'src'
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else:
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return 'projects/cmake/build'
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@when('@1.1.0:')
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def cmake_args(self):
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args = []
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if '+mpi' in self.spec:
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args.extend([
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self.define('MPI', 'ON'),
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self.define('RB_EXEC_NAME', 'rb-mpi'),
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])
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return args
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@run_before('cmake')
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def regenerate(self):
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with working_dir(join_path('projects', 'cmake')):
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mkdirp('build')
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if self.spec.version > Version('1.0.13'):
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generate_version = Executable('./generate_version_number.sh')
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generate_version()
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dest = join_path('..', '..', 'src', 'revlanguage', 'utils')
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install('GitVersion.cpp', dest)
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else:
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edit = FileFilter('regenerate.sh')
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edit.filter('boost="true"', 'boost="false"')
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if '+mpi' in self.spec:
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edit.filter('mpi="false"', 'mpi="true"')
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regenerate = Executable('./regenerate.sh')
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regenerate()
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if '+mpi' in spec:
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install_path = join_path(self.build_directory, '..', 'rb-mpi')
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install(install_path, prefix.bin)
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else:
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install_path = join_path(self.build_directory, '..', 'rb')
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install(install_path, prefix.bin)
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@when('@1.0.12:1.0.13')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install_path = join_path(self.build_directory, '..', 'rb')
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install(install_path, prefix.bin)
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