a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
27 lines
971 B
Python
27 lines
971 B
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Transabyss(Package):
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"""De novo assembly of RNAseq data using ABySS"""
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homepage = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
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url = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
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version('1.5.5', sha256='7804961c13296c587a1b22180dd3f02091a4494cbbd04fc33c2060599caadb0b')
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depends_on('abyss@1.5.2')
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depends_on('python@2.7.6:', type=('build', 'run'))
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depends_on('py-python-igraph@0.7.0:', type=('build', 'run'))
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depends_on('blat')
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def install(self, spec, prefix):
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install('transabyss', prefix)
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install('transabyss-merge', prefix)
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install_tree('bin', prefix.bin)
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install_tree('utilities', prefix.utilities)
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