53 lines
1.9 KiB
Python
53 lines
1.9 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Mrbayes(AutotoolsPackage):
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"""MrBayes is a program for Bayesian inference and model choice across a
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wide range of phylogenetic and evolutionary models. MrBayes uses Markov
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chain Monte Carlo (MCMC) methods to estimate the posterior distribution
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of model parameters."""
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homepage = "http://mrbayes.sourceforge.net"
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url = "https://github.com/NBISweden/MrBayes/releases/download/v3.2.7a/mrbayes-3.2.7a.tar.gz"
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license("GPL-3.0-or-later")
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version("3.2.7a", sha256="1a4670be84e6b968d59382328294db4c8ceb73e0c19c702265deec6f2177815c")
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version("3.2.7", sha256="39d9eb269969b501268d5c27f77687c6eaa2c71ccf15c724e6f330fc405f24b9")
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variant("mpi", default=True, description="Enable MPI parallel support")
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variant("beagle", default=True, description="Enable BEAGLE library for speed benefits")
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variant(
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"readline", default=False, description="Enable readline library, not recommended with MPI"
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)
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depends_on("libbeagle", when="+beagle")
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depends_on("mpi", when="+mpi")
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depends_on("readline", when="+readline")
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def configure_args(self):
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args = []
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if "~beagle" in self.spec:
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args.append("--with-beagle=no")
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else:
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args.append("--with-beagle=%s" % self.spec["libbeagle"].prefix)
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if "+readline" in self.spec:
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args.append("--with-readline=yes")
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else:
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args.append("--with-readline=no")
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if "~mpi" in self.spec:
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args.append("--with-mpi=no")
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else:
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args.append("--with-mpi=yes")
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return args
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir("src"):
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install("mb", prefix.bin)
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