Paschalis Korosoglou ab499a958d otf2 package: fix download URL (#10735)		2019-02-27 12:47:56 -06:00
..
abinit
abyss
accfft
ack
activeharmony
acts-core	ACTS: new package (#10600)	2019-02-25 11:11:01 +01:00
adept-utils
adios
adios2	ADIOS package: add version 2.3.1 (#10666)	2019-02-22 18:36:04 -06:00
adlbx
adol-c
aegean
aida
albany
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum	Update lbann sw stack dependencies (#10579)	2019-02-13 11:19:15 -08:00
amg
amg2013
amp
ampliconnoise
amrex
amrvis
andi
angsd
ant
antlr
ants
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
archer
argobots
argp-standalone
argtable
arlecore
armadillo
arpack-ng
arrow
ascent
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
atk
atlas
atom-dft
atompaw
atop
augustus	augustus: fix bam2wig auxprog build (#10362)	2019-02-04 10:36:10 -06:00
autoconf
autodock-vina
autofact
autogen
automaded
automake	automake package: add version 1.13.4 (#10662)	2019-02-22 18:38:00 -06:00
axel
axl
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2	beast2 package: add version 2.5.2 (#10723)	2019-02-26 18:38:21 -06:00
beast-tracer	beast-tracer: new package at 1.7.1 (#10652)	2019-02-22 19:22:30 -06:00
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast-plus
blat
blaze
blis
bliss
blitz
bmake
bml
bohrium
bolt
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
brigand
bsseeker2
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2
c-blosc
c-lime
cabana
caffe
cairo
cairomm
caliper
callpath
camellia
candle-benchmarks
cantera
canu
cap3
capstone
cardioid	Adding a package for cardioid. (#10448)	2019-02-08 11:17:26 +01:00
cares
casacore	casacore: new package (#7471)	2019-02-12 17:22:48 +01:00
cask
casper
catalyst
catch	Catch2: v2.6.1 (#10613)	2019-02-18 08:53:33 +01:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdecimal	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
cdhit
cdo	cdo package: add version 1.9.6 (#10654)	2019-02-22 18:38:35 -06:00
ceed
cereal
ceres-solver
cfitsio
cgal
cgm
cgns
channelflow
charliecloud	add charliecloud 0.9.7 (#10661)	2019-02-21 09:58:37 +01:00
charmpp
chatterbug
check
chlorop
chombo
chrpath
circos
cistem
citcoms
cityhash
clamr
clapack
claw	Update CLAW package with version 1.2.1 (#10528)	2019-02-06 15:51:52 +01:00
cleaveland4
cleverleaf
clfft
clhep	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustalo
clustalw
cmake	cmake: add version 3.13.4 (#10538)	2019-02-07 09:15:32 +01:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator	Cnvnator: a new package. (#8959)	2019-02-13 11:15:00 +01:00
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
connect-proxy	connect-proxy: new package (#10635)	2019-02-19 11:30:09 +01:00
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k	cp2k is now a MakefilePackage (#10570)	2019-02-14 07:11:20 +01:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery	cquery: new package (#10636)	2019-02-19 11:30:41 +01:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cubelib
cubew
cuda
cuda-memtest
cudnn
cufflinks
cups
curl	curl package: add version 7.63.0 (#10516)	2019-02-06 13:48:36 -06:00
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
davix
dbcsr
dbus
dcmtk
dd4hep	Add a DD4hep package (#9208)	2019-02-13 22:58:27 -06:00
dealii	dealii: fix default of cuda_arch (#10690)	2019-02-24 08:53:13 +01:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx
diamond
diffsplice
diffutils	Download GNU packages from mirrors (Part 2) (#10555)	2019-02-20 09:08:42 -06:00
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst	dyninst: add patch to work with new boost (#10454)	2019-02-01 16:18:16 -06:00
ea-utils
easybuild
ebms
eccodes
ecflow
eclipse-gcj-parser
ecp-proxy-apps
ed
editres
eigen	Eigen package: deactivate some dependencies (#10572)	2019-02-13 13:33:01 -06:00
elasticsearch
elemental
elfutils
elk
elpa
elsd
elsdc
emacs
ember
emboss
encodings
energyplus
entrezdirect
environment-modules	Update environment-modules package (#10717)	2019-02-27 14:00:46 +01:00
eospac	eospac package: add version 6.4.0 (#10718)	2019-02-26 18:38:52 -06:00
er
erne
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache
fabtests
falcon
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw	fftw: fix include error for 2.x versions (#10039)	2019-01-30 21:18:10 -06:00
figtree
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flecsale
flecsi
flex
flint
flit
fltk
flux-core
flux-sched
fluxbox
fmt	fmt package: fix cmake arguments (#10500)	2019-02-06 13:52:49 -06:00
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fr-hit
freebayes
freeglut
freetype	Dynamic library/include paths (#8136)	2019-02-13 17:38:14 -06:00
freexl
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
funhpc
fyba
g4abla	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4emlow	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4ensdfstate	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4ndl	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4neutronxs	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4photonevaporation	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4pii	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4radioactivedecay	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4realsurface	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4saiddata	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
g4tendl	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
gapbs
gapcloser
gapfiller
gasnet
gatk	gatk package: new versions, updated helper script (#10459)	2019-01-31 16:10:06 -06:00
gaudi	Gaudi package: new version + xenv bugfix (#10668)	2019-02-21 19:04:03 -06:00
gaussian
gawk
gblocks
gcc	gcc package: skip nvptx_install for gcc~nvptx (#10672)	2019-02-21 15:43:29 -06:00
gccmakedep
gccxml
gconf
gcta
gdal
gdb
gdbm
gdk-pixbuf
gdl
geant4	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
geant4-data	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
gearshifft
gemmlowp
genemark-et	genemark et package: add version 4.38 (#10519)	2019-02-06 13:46:35 -06:00
genomefinisher
genometools
geopm
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
git
git-fat-git
git-imerge
git-lfs	git-lfs: add version 2.7.0 (#10631)	2019-02-18 08:59:11 +01:00
gl2ps
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap	gmap-gsnap package: Add version 2019-02-15 (#10677)	2019-02-22 18:36:40 -06:00
gmime
gmodel
gmp
gmsh
gmt
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest
gotcha
gource
gperf
gperftools
gpgme
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass
grib-api
grnboost
groff
gromacs
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5	HDF5: Add develop Version (#10382)	2019-01-30 21:04:24 -06:00
hdf5-blosc
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
homer
hoomd-blue
hpccg
hpctoolkit
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell
hwloc
hybpiper
hydra
hydrogen	Update lbann sw stack dependencies (#10579)	2019-02-13 11:19:15 -08:00
hypre
i3
ibmisc
iceauth
icedtea
icet
ico
icu4c	icu4c: Add cxxstd variant (#10552)	2019-02-13 23:05:39 -06:00
id3lib
idba
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-tbb
intel-xed
intltool
ior	update IOR package (#10595)	2019-02-19 12:10:17 +01:00
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk	jdk package: add version 1.8.0_202 (#10536)	2019-02-06 13:54:02 -06:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib	kealib package: add version 1.4.11 (#10706)	2019-02-26 18:39:27 -06:00
kentutils
kibana
kim-api
kmergenie
kokkos
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
laghos
lammps
last
lastz
latte
launchmon
lazyten
lbann	Update lbann sw stack dependencies (#10579)	2019-02-13 11:19:15 -08:00
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive	libarchive: remove lzma dependency (#10517)	2019-02-08 16:33:13 +01:00
libassuan
libatomic-ops
libbeagle	libbeagle package: add cuda support (#10650)	2019-02-26 18:50:08 -06:00
libbeato
libbsd	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio	Add libhio v1.4.1.3, 1.4.1.1 (#10699)	2019-02-26 09:56:20 +01:00
libiberty
libice
libiconv
libint	cp2k is now a MakefilePackage (#10570)	2019-02-14 07:11:20 +01:00
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
libmesh
libmng
libmongoc
libmonitor
libnbc
libnl
libnova
libnsl	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libplist	new package: libplist (#10680)	2019-02-26 19:12:41 -06:00
libpng
libpsl
libpthread-stubs
libquo
librom
libseccomp	nix: new package added (#9171)	2019-02-19 15:27:39 +01:00
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
libszip
libtasn1	new package: libtasn1 (#10681)	2019-02-26 20:52:04 -06:00
libtermkey
libtiff
libtirpc	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
libtool
libunistring
libunwind
libusb	new package: libusb (#10682)	2019-02-26 20:52:47 -06:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc	cp2k is now a MakefilePackage (#10570)	2019-02-14 07:11:20 +01:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2	Use Package.headers for -I options (#10623)	2019-02-26 12:42:30 -06:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml	new package: libyaml (#10634)	2019-02-19 12:45:31 -06:00
libyogrt
libzip
lighttpd
likwid
linkphase3
linux-headers
listres
llvm
llvm-openmp-ompt
lm-sensors
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft	mafft package: add version 7.407 (#10488)	2019-02-06 13:55:16 -06:00
magics
magma
makedepend
mallocmc
man-db	remove remaining lzma dependencies (#10553)	2019-02-12 09:03:50 +01:00
manta
mapserver
maq
mariadb
masa
masurca
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit
megahit
memaxes
meme
memkind
meraculous
mercurial
mercury	mercury package: add 'udreg' variant (#10415)	2019-02-04 19:51:04 -06:00
mesa
mesa-glu
meshkit
meson	meson: add 0.49.1 and disable rpath stripping (#10463)	2019-02-08 11:15:49 +01:00
mesquite
metabat
metaphysicl
metis
mfem
mgis
microbiomeutil
migrate
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minuit
mira
mirdeep2	mirdeep2 package: make sure bins are executable (#10515)	2019-02-07 13:05:19 -06:00
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono	mono package: add new versions (#10670)	2019-02-21 18:52:30 -06:00
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant	MPark: Variant v1.4.0 (#10512)	2019-02-05 15:18:19 +01:00
mpc	Download GNU packages from mirrors (Part 2) (#10555)	2019-02-20 09:08:42 -06:00
mpdecimal	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils	mpiFileUtils v0.9 (#10676)	2019-02-25 09:24:52 -08:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2	mvapich2: Improve package (#10642)	2019-02-19 11:02:02 +01:00
mxml
mxnet
nag
nalu
nalu-wind
namd
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncview
ndiff
nek5000
nekbone
nekcem
nektar
neovim
nest
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack	netlib-scalapack package: add CMake test patch (#10452)	2019-02-07 20:58:27 -06:00
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nix	nix: new package added (#9171)	2019-02-19 15:27:39 +01:00
nlohmann-json	NLohmann-JSON: v3.5.0 (#10615)	2019-02-18 08:53:50 +01:00
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
openblas	Don't try to build TARGET=PILEDRIVER on aarch64	2019-02-26 18:40:39 -06:00
opencoarrays
opencv
openexr
openfast
openfoam-com
openfoam-org
openfst
opengl
openglu
openimageio
openjdk	New package: openjdk (#9861)	2019-01-31 12:54:28 -06:00
openjpeg
openmc
openmpi
opennurbs
openpa
openpmd-api	openPMD-api: mpi4py support (#10616)	2019-02-18 08:54:27 +01:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl	Add comments and version (#10592)	2019-02-18 21:48:01 -06:00
opium
optional-lite
opus
orca
orfm
orthofiller	orthofiller: new package at 1.1.4 (#10373)	2019-02-07 10:22:36 +01:00
orthofinder
orthomcl
osmctools
osu-micro-benchmarks
otf
otf2	otf2 package: fix download URL (#10735)	2019-02-27 12:47:56 -06:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
paml
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf
paraver
paraview	Paraview package: update PYTHONPATH for dependents (#10501)	2019-02-06 12:45:14 -06:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose	New package: perl-clone-choose (#10507)	2019-02-04 18:04:55 -06:00
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir	perl-file-homedir: new package (#10533)	2019-02-07 10:09:20 +01:00
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge	New package: perl-hash-merge (#10506)	2019-02-04 18:05:36 -06:00
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple	new package: perl logger simple (#10509)	2019-02-07 10:19:07 +01:00
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout	New package: perl-object-insideout (#10508)	2019-02-06 13:53:33 -06:00
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml	perl-yaml: new package (#10514)	2019-02-06 15:47:54 +01:00
perl-yaml-libyaml
petsc	petsc: add version 3.10.4 (#10724)	2019-02-26 20:41:33 -06:00
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat	phrap-crossmatch-swat: new package at 1.090518 (#10529)	2019-02-06 19:13:44 -06:00
phred	new package: phred (#10700)	2019-02-26 19:14:58 -06:00
phylip
phyluce
picard
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism
pixman	add latest version of pixman (#10580)	2019-02-13 21:26:51 +01:00
pkg-config
pkgconf
planck-likelihood
plasma
platypus
plink
plplot
plumed	cp2k is now a MakefilePackage (#10570)	2019-02-14 07:11:20 +01:00
pmdk	New package: PMDK (#10453)	2019-02-05 16:53:16 -06:00
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
poppler-data
porta
portage
portcullis
postgresql
ppl
pplacer
prank
precice
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi	new variant: simmodsuite for pumi (#8775)	2019-02-14 21:36:56 +01:00
pv
pvm
pxz	remove remaining lzma dependencies (#10553)	2019-02-12 09:03:50 +01:00
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-alembic	New package: py-alembic (#10436)	2019-02-01 16:24:44 -06:00
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-astropy
py-async-generator	New package: py-async-generator (#10439)	2019-02-01 12:40:19 -06:00
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython	py-biopython: new version (#10532)	2019-02-07 10:08:45 +01:00
py-bitarray
py-bitstring
py-black	py-black: add new package	2019-02-06 13:50:04 -06:00
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-cftime
py-chardet
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
py-cloudpickle
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-dask	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona
py-fiscalyear
py-flake8	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn
py-fparser
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gdbgui
py-genders
py-genshi
py-geopandas
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-hdfs
py-hepdata-validator
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-ipython-genutils	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-joblib
py-jprops
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-jupyterhub	New package: py-jupyterhub (#10461)	2019-02-07 16:47:46 -06:00
py-keras
py-keras-applications	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-keras-preprocessing	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-kiwisolver
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble	libEnsemble package: add v0.4.1 (#10688)	2019-02-25 14:37:51 -06:00
py-line-profiler
py-linecache2
py-lit	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-merlin
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-mpmath	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-multiprocess
py-multiqc	py-multiqc: add version 1.7 (#10520)	2019-02-06 13:47:59 -06:00
py-munch
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-netifaces
py-networkx	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-nose
py-nosexcover
py-numba
py-numexpr
py-numexpr3
py-numpy	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-petsc4py	petsc4py and libensemble: add @develop dependencies (#10539)	2019-02-07 09:06:31 -06:00
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pint
py-pip	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pipits
py-pkgconfig	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-plotly
py-pluggy
py-ply
py-pmw	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-poster
py-pox
py-ppft
py-prettytable
py-progress
py-projectq
py-prometheus-client	New package: py-prometheus-client (#10440)	2019-02-01 16:23:59 -06:00
py-prompt-toolkit
py-protobuf
py-psutil	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1
py-pybigwig	py-pybigwig: fix build with python3, add numpy variant (#10444)	2019-01-31 14:50:10 -06:00
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pygdbmi
py-pygments	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pylint	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pymatgen
py-pyminifier
py-pymol	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pypar
py-pyparsing	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pypeflow
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark
py-pysqlite
py-pytables
py-pytest	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome	fixed checksum (#10393)	2019-02-07 10:20:45 +01:00
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-requests-toolbelt
py-restview
py-rope
py-rpy2	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-scikit-learn	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-scipy	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-seaborn
py-send2trash
py-setuptools	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra
py-spefile
py-spglib
py-sphinx	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-tabulate
py-tappy
py-terminado
py-testinfra
py-tetoolkit
py-theano	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-tifffile
py-toml	py-toml: add latest version and update checksums to sha256	2019-02-06 13:50:04 -06:00
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unicycler	py-unicycler: new package (#7727)	2019-02-25 09:44:05 +01:00
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel	Add newer versions for 51 Python packages (#10738)	2019-02-27 12:45:28 -06:00
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xdot
py-xenv	Gaudi package: new version + xenv bugfix (#10668)	2019-02-21 19:04:03 -06:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6	pythia6: fix input verification issue and example data checksum. (#10563)	2019-02-13 23:17:46 -06:00
python	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
qbank
qbox
qca
qhull
qjson
qmcpack	QMCPACK package: cuda/hdf5 fixes (#10701)	2019-02-26 20:50:32 -06:00
qmd-progress
qorts
qrupdate
qt
qt-creator
qtgraph
qthreads
quantum-espresso	Quantum ESPRESSO package: Serial HDF5 Bug Fix (#10689)	2019-02-26 18:36:50 -06:00
quinoa
qwt
r
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-complexheatmap
r-compositions
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv	r-nleqslv: new package at 3.3.2 (#10696)	2019-02-26 12:19:48 -06:00
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phytools
r-picante
r-pkgconfig
r-pkgmaker	r-pkgmaker: add 0.27, new dependencies (#10419)	2019-01-30 20:54:24 -06:00
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs	r-vfs: new package at 1.0.2 (#10697)	2019-02-26 12:21:12 -06:00
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna	r-wgcna: new package at 1.64-1 (#10392)	2019-02-05 09:00:25 -06:00
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone
rdma-core
rdp-classifier
re2c
readfq
readline
recordproto
redset
redundans
regcm
relax	Add Gaudi and RELAX packages (#9194)	2019-02-13 23:04:38 -06:00
relion
rempi
rename
rendercheck
renderproto
repeatmasker	repeatmasker package: add variant for cross_match engine (#10534)	2019-02-07 16:53:30 -06:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb
rockstar
root	Fix plural typo in ROOT package (#10614)	2019-02-16 21:22:23 +01:00
rose
ross
routino	new package: routino (#10679)	2019-02-26 18:41:44 -06:00
rpcsvc-proto	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis
sailfish
salmon
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sdsl-lite
seacas
sed
sentieon-genomics
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio
singularity
skilion-onedrive
slate
sleef
slepc
slurm	slurm: Add PMI support (#10683)	2019-02-25 13:05:31 -06:00
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squid
sra-toolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks	stacks package: add version 2.3b (#10653)	2019-02-22 19:16:44 -06:00
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talass
talloc
tantan
tar	tar: add version 1.31 (#10485)	2019-02-04 11:02:13 +01:00
targetp
task
taskd
tasmanian
tassel
tau
tcl	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo
texlive
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time	Download GNU packages from mirrors (Part 2) (#10555)	2019-02-20 09:08:42 -06:00
tinyxml
tinyxml2
tioga
tk	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos	Trilinos package: update superlu-dist dependency (#10511)	2019-02-07 12:58:45 -06:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity
trinotate
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx	UCX package: add version 1.5.0 (#10678)	2019-02-21 18:22:32 -06:00
udunits2
ufo-core
ufo-filters
umpire
unblur
uncrustify
unibilium
unifycr
unison
units
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
uvw	uvw: new package (#10645)	2019-02-20 13:53:07 +01:00
valgrind
vampirtrace	vampirtrace: patch for new mpich and openmpi versions (#10665)	2019-02-26 18:48:14 -06:00
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom	Updated Geant4 and dependencies clhep and vecgeom to use cxxstd= variant (#10518)	2019-02-13 22:51:26 -06:00
veclibfort
vegas2
veloc
velvet
verilator
verrou
videoproto
viennarna
viewres
vigra
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg	votca*: add v1.5 (#10495)	2019-02-04 12:57:19 -07:00
votca-ctp	votca*: add v1.5 (#10495)	2019-02-04 12:57:19 -07:00
votca-tools	votca*: add v1.5 (#10495)	2019-02-04 12:57:19 -07:00
votca-xtp	votca*: add v1.5 (#10495)	2019-02-04 12:57:19 -07:00
vpfft
vpic
vsearch
vt
vtk
vtkh
vtkm
wannier90
warpx
wcslib
wget
wgsim
windowswmproto
wireshark
wordnet	wordnet: new package (#10526)	2019-02-06 15:38:48 +01:00
workrave
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c	xerces-c: Add cxxstd variant (#10561)	2019-02-12 09:40:59 +01:00
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd	xrootd: allow specification of C++ standard. (#10577)	2019-02-13 23:17:10 -06:00
xrx
xsbench
xscope
xsd
xsdk	xsdk@develop fixes (#10521)	2019-02-07 09:05:14 -06:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash	xxhash: edit prefix in Makefile for macOS (#10606)	2019-02-20 10:55:09 +01:00
xz	Python: optional dependencies and post-installation tests (#10335)	2019-02-23 12:36:26 -06:00
yajl
yambo
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd