31 lines
1.1 KiB
Python
31 lines
1.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
|
|
from spack import *
|
|
|
|
|
|
class Falcon(PythonPackage):
|
|
"""Falcon: a set of tools for fast aligning long reads for consensus
|
|
and assembly.
|
|
|
|
The Falcon tool kit is a set of simple code collection which I use
|
|
for studying efficient assembly algorithm for haploid and diploid genomes.
|
|
It has some back-end code implemented in C for speed and some simple
|
|
front-end written in Python for convenience."""
|
|
|
|
homepage = "https://github.com/PacificBiosciences/FALCON"
|
|
git = "https://github.com/PacificBiosciences/FALCON.git"
|
|
|
|
version('2017-05-30', commit='86cec6157291679095ea6080b0cde6561eccc041')
|
|
|
|
depends_on('py-setuptools', type='run')
|
|
depends_on('py-pypeflow', type='run')
|
|
depends_on('py-networkx@1.7:1.10', type=['build', 'run'])
|
|
depends_on('pacbio-dazz-db', type='run')
|
|
depends_on('pacbio-daligner', type='run')
|
|
depends_on('pacbio-dextractor', type='run')
|
|
depends_on('pacbio-damasker', type='run')
|