ab4a645cbe
* various pkgs: use https homepage when http redirects (github.io) * py-owslib: fix homepage * py-owslib: fix homepage to rtd * h5io: fix homepage
41 lines
1.6 KiB
Python
41 lines
1.6 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class PyPhydms(PythonPackage):
|
|
"""phydms enables phylogenetic analyses using deep mutational scanning data
|
|
to inform the substitution models. It implements Experimentally informed
|
|
codon models (ExpCM) for phylogenetic inference and the detection of
|
|
biologically interesting selection."""
|
|
|
|
homepage = "https://jbloomlab.github.io/phydms"
|
|
pypi = "phydms/phydms-2.4.1.tar.gz"
|
|
|
|
license("GPL-3.0-or-later")
|
|
|
|
version("2.4.1", sha256="04eb50bdb07907214050d19214d9bc8cf2002e24ca30fbe6e0f23f013d584d5c")
|
|
|
|
depends_on("c", type="build") # generated
|
|
|
|
depends_on("python@3.5:", type=("build", "run"))
|
|
depends_on("py-setuptools", type="build")
|
|
|
|
depends_on("py-biopython@1.67:", type=("build", "run"))
|
|
depends_on("py-cython@0.28:", type=("build", "run"))
|
|
depends_on("py-numpy@1.16.5:", type=("build", "run"))
|
|
depends_on("py-scipy@0.18:", type=("build", "run"))
|
|
depends_on("py-matplotlib@2.0.2:", type=("build", "run"))
|
|
depends_on("py-natsort@5.0.1:", type=("build", "run"))
|
|
depends_on("py-sympy@1.0:", type=("build", "run"))
|
|
depends_on("py-six@1.10:", type=("build", "run"))
|
|
depends_on("py-pandas@0.20.2:", type=("build", "run"))
|
|
depends_on("py-pyvolve@1.0.3:", type=("build", "run"))
|
|
depends_on("py-statsmodels@0.8:", type=("build", "run"))
|
|
depends_on("py-weblogo@3.4:3.5", type=("build", "run"))
|
|
depends_on("py-pypdf2@1.26:", type=("build", "run"))
|