39 lines
1.2 KiB
Python
39 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class SnapBerkeley(MakefilePackage):
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"""SNAP is a fast and accurate aligner for short DNA reads. It is
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optimized for modern read lengths of 100 bases or higher, and takes
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advantage of these reads to align data quickly through a hash-based
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indexing scheme."""
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homepage = "http://snap.cs.berkeley.edu/"
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url = "https://github.com/amplab/snap/archive/v1.0beta.18.tar.gz"
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version('1.0beta.18', '41e595fffa482e9eda1c3f69fb5dedeb')
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version('0.15', 'a7d87cc822f052665a347ab0aa84d4de', preferred=True)
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depends_on('zlib')
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conflicts('%gcc@6:')
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conflicts('%cce')
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conflicts('%clang')
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conflicts('%intel')
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conflicts('%nag')
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conflicts('%pgi')
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conflicts('%xl')
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conflicts('%xl_r')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if self.spec.satisfies('@1.0beta.18:'):
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install('snap-aligner', prefix.bin)
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install('SNAPCommand', prefix.bin)
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else:
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install('snap', prefix.bin)
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