47 lines
2.2 KiB
Python
47 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RSimpleaffy(RPackage):
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"""Provides high level functions for reading Affy .CEL files,
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phenotypic data, and then computing simple things with it, such as
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t-tests, fold changes and the like. Makes heavy use of the affy
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library. Also has some basic scatter plot functions and mechanisms
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for generating high resolution journal figures..."""
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homepage = "http://bioconductor.org/packages/simpleaffy/"
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url = "https://git.bioconductor.org/packages/simpleaffy"
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list_url = homepage
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version('2.52.0', git='https://git.bioconductor.org/packages/simpleaffy', commit='f2b43fb9b8e6fa4c03fe28b4efb3144a0a42a385')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-affy', type=('build', 'run'))
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depends_on('r-genefilter', type=('build', 'run'))
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depends_on('r-gcrma', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@2.52.0')
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