62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
31 lines
1.0 KiB
Python
31 lines
1.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Vegas2(Package):
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""""VEGAS2 is an extension that uses 1,000 Genomes data to model SNP
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correlations across the autosomes and chromosome X"""
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homepage = "https://vegas2.qimrberghofer.edu.au/"
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url = "https://vegas2.qimrberghofer.edu.au/vegas2v2"
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version('2', sha256='dc85834219141a4e9a246391b48185a739223a5e00b1b1c4d2517822388278ba', expand=False)
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depends_on('perl', type='run')
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depends_on('r', type='run')
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depends_on('plink')
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depends_on('r-mvtnorm', type='run')
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depends_on('r-corpcor', type='run')
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def url_for_version(self, version):
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url = 'https://vegas2.qimrberghofer.edu.au/vegas2v{0}'
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return url.format(version)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('vegas2v{0}'.format(self.version), prefix.bin)
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