28 lines
1.2 KiB
Python
28 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAcme(RPackage):
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"""ACME (Algorithms for Calculating Microarray Enrichment) is a set
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of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity,
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or other experiments that result in regions of the genome showing
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"enrichment". It does not rely on a specific array technology
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(although the array should be a "tiling" array), is very general
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(can be applied in experiments resulting in regions of enrichment),
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and is very insensitive to array noise or normalization methods.
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It is also very fast and can be applied on whole-genome tiling array
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experiments quite easily with enough memory."""
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homepage = "https://www.bioconductor.org/packages/ACME/"
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git = "https://git.bioconductor.org/packages/ACME.git"
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version('2.32.0', commit='76372255d7714a0c8128a11c028bf70214dac407')
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depends_on('r@3.4.0:3.4.9', when='@2.32.0')
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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