36 lines
1.6 KiB
Python
36 lines
1.6 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RTopgo(RPackage):
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"""Enrichment Analysis for Gene Ontology.
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topGO package provides tools for testing GO terms while accounting for
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the topology of the GO graph. Different test statistics and different
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methods for eliminating local similarities and dependencies between GO
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terms can be implemented and applied."""
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homepage = "https://bioconductor.org/packages/topGO"
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git = "https://git.bioconductor.org/packages/topGO.git"
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version('2.36.0', commit='c2f6c187b41c4aa44cc92ac781fdd878491a4019')
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version('2.34.0', commit='44cb5eaba515b365b7b2a8c22df0a45883db6b4d')
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version('2.32.0', commit='78ce3068fc06ae38d55219759fa177e2fcb3f596')
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version('2.30.1', commit='b1469ce1d198ccb73ef79ca22cab81659e16dbaa')
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version('2.28.0', commit='066a975d460046cce33fb27e74e6a0ebc33fd716')
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depends_on('r@2.10.0:', type=('build', 'run'))
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depends_on('r-biocgenerics@0.13.6:', type=('build', 'run'))
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depends_on('r-graph@1.14.0:', type=('build', 'run'))
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depends_on('r-biobase@2.0.0:', type=('build', 'run'))
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depends_on('r-go-db@2.3.0:', type=('build', 'run'))
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depends_on('r-annotationdbi@1.7.19:', type=('build', 'run'))
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depends_on('r-sparsem@0.73:', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-matrixstats', type=('build', 'run'))
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depends_on('r-dbi', type=('build', 'run'))
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