| .. |
|
abinit
|
|
|
|
abyss
|
added bwa runtime dep (#10012)
|
2018-12-04 17:19:56 -06:00 |
|
accfft
|
|
|
|
ack
|
|
|
|
activeharmony
|
|
|
|
adept-utils
|
|
|
|
adios
|
|
|
|
adios2
|
|
|
|
adlbx
|
|
|
|
adol-c
|
|
|
|
aegean
|
|
|
|
aida
|
|
|
|
albany
|
|
|
|
albert
|
|
|
|
alglib
|
|
|
|
allinea-forge
|
|
|
|
allinea-reports
|
|
|
|
allpaths-lg
|
|
|
|
alquimia
|
xsdk-0.4.0: add/update package versions: (#10038)
|
2018-12-23 17:35:03 -08:00 |
|
alsa-lib
|
|
|
|
aluminum
|
Update LBANN generator and bug fix (#9906)
|
2018-12-10 15:12:43 -08:00 |
|
amg
|
|
|
|
amg2013
|
|
|
|
amp
|
|
|
|
ampliconnoise
|
|
|
|
amrex
|
|
|
|
amrvis
|
|
|
|
andi
|
|
|
|
angsd
|
|
|
|
ant
|
|
|
|
antlr
|
|
|
|
ants
|
|
|
|
ape
|
|
|
|
aperture-photometry
|
|
|
|
apex
|
|
|
|
apple-libunwind
|
|
|
|
applewmproto
|
|
|
|
appres
|
|
|
|
apr
|
|
|
|
apr-util
|
|
|
|
aragorn
|
aragorn: add version 1.2.36 (#9817)
|
2018-11-13 10:09:14 -06:00 |
|
archer
|
|
|
|
argobots
|
Argobots: added @develop version and +valgrind variant (#9664)
|
2018-11-14 21:39:35 -06:00 |
|
argp-standalone
|
|
|
|
argtable
|
|
|
|
arlecore
|
|
|
|
armadillo
|
|
|
|
arpack-ng
|
|
|
|
arrow
|
flatbuffers: add 1.10.0 (#10137)
|
2018-12-18 10:53:02 -06:00 |
|
ascent
|
|
|
|
asciidoc
|
|
|
|
asciidoctor
|
package: add asciidoctor gem (#9905)
|
2018-11-20 14:32:44 -06:00 |
|
aspa
|
|
|
|
aspcud
|
|
|
|
aspect
|
|
|
|
aspell
|
|
|
|
aspell6-de
|
|
|
|
aspell6-en
|
|
|
|
aspell6-es
|
|
|
|
aspera-cli
|
|
|
|
assimp
|
|
|
|
astra
|
|
|
|
astral
|
|
|
|
astyle
|
|
|
|
at-spi2-atk
|
|
|
|
at-spi2-core
|
Add missing gettext dependency to at-spi2-core (#10124)
|
2018-12-17 14:00:53 -06:00 |
|
atk
|
Add latest version of atk (#10125)
|
2018-12-17 08:48:31 +01:00 |
|
atlas
|
Add thread count variant to atlas (#9999)
|
2018-12-17 19:12:00 -06:00 |
|
atom-dft
|
|
|
|
atompaw
|
|
|
|
atop
|
|
|
|
augustus
|
|
|
|
autoconf
|
|
|
|
autodock-vina
|
|
|
|
autofact
|
|
|
|
autogen
|
|
|
|
automaded
|
|
|
|
automake
|
|
|
|
axel
|
Fix pkg-config dependencies (#9738)
|
2018-11-13 00:01:41 -06:00 |
|
axl
|
correct sha for axl v1.1 (#9907)
|
2018-11-20 19:28:47 -06:00 |
|
bamdst
|
|
|
|
bamtools
|
|
|
|
bamutil
|
|
|
|
barrnap
|
barrnap package: Add versions 0.6 and 0.7 (#9820)
|
2018-11-13 09:33:56 -06:00 |
|
bash
|
|
|
|
bash-completion
|
|
|
|
bats
|
|
|
|
bazel
|
|
|
|
bbcp
|
|
|
|
bbmap
|
|
|
|
bc
|
|
|
|
bcftools
|
bcftools: add version 1.9 (#9595)
|
2018-10-19 17:30:52 -07:00 |
|
bcl2fastq2
|
Disallow bcl2fastq2 on OS X (#9966)
|
2018-12-04 13:44:15 +01:00 |
|
bdftopcf
|
|
|
|
bdw-gc
|
Add latest version of bdw-gc (#10100)
|
2018-12-14 21:09:19 -06:00 |
|
bear
|
|
|
|
beast1
|
|
|
|
beast2
|
|
|
|
bedops
|
|
|
|
bedtools2
|
|
|
|
beforelight
|
|
|
|
benchmark
|
|
|
|
berkeley-db
|
|
|
|
bertini
|
|
|
|
bib2xhtml
|
|
|
|
bigreqsproto
|
|
|
|
binutils
|
|
|
|
bioawk
|
|
|
|
biobloom
|
biobloom: new package at 2.2.0 (#10014)
|
2018-12-04 17:20:24 -06:00 |
|
biopieces
|
|
|
|
bismark
|
|
|
|
bison
|
|
|
|
bitmap
|
|
|
|
blasr
|
|
|
|
blasr-libcpp
|
|
|
|
blast-plus
|
|
|
|
blat
|
|
|
|
blaze
|
|
|
|
blis
|
|
|
|
bliss
|
|
|
|
blitz
|
|
|
|
bmake
|
|
|
|
bml
|
|
|
|
bohrium
|
|
|
|
bolt
|
|
|
|
bookleaf-cpp
|
Add version 2.0.2 of BookLeaf_Cpp and version 3.0.2 of Typhon. (#9662)
|
2018-11-02 13:30:52 -07:00 |
|
boost
|
boost: add 1.69.0 (#10083)
|
2018-12-12 10:14:47 -06:00 |
|
boostmplcartesianproduct
|
|
|
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
boxlib
|
|
|
|
bpp-core
|
|
|
|
bpp-phyl
|
|
|
|
bpp-seq
|
|
|
|
bpp-suite
|
|
|
|
bracken
|
|
|
|
braker
|
|
|
|
branson
|
|
|
|
breakdancer
|
|
|
|
breseq
|
breseq: Add version 0.33.1 (#9889)
|
2018-11-19 20:42:21 -06:00 |
|
brigand
|
|
|
|
bsseeker2
|
|
|
|
bucky
|
|
|
|
bumpversion
|
|
|
|
busco
|
|
|
|
butter
|
|
|
|
bwa
|
|
|
|
bwtool
|
|
|
|
byobu
|
|
|
|
bzip2
|
|
|
|
c-blosc
|
c-blosc: 1.15.0 (#10009)
|
2018-12-04 09:10:08 -06:00 |
|
c-lime
|
|
|
|
cabana
|
cabana: added v0.1.0 (#9644)
|
2018-10-26 11:18:42 +02:00 |
|
caffe
|
|
|
|
cairo
|
Add pdf variant to cairo (#10135)
|
2018-12-18 16:39:36 +01:00 |
|
cairomm
|
|
|
|
caliper
|
caliper: specify path to libunwind (#9670)
|
2018-10-30 18:37:44 +01:00 |
|
callpath
|
|
|
|
camellia
|
|
|
|
candle-benchmarks
|
|
|
|
cantera
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
canu
|
canu: use built-in makefile install (#9726)
|
2018-11-08 10:28:10 +01:00 |
|
cap3
|
|
|
|
cares
|
|
|
|
cask
|
|
|
|
casper
|
|
|
|
catalyst
|
openFOAM-paraview-catalyst (#10129)
|
2018-12-23 13:40:25 -06:00 |
|
catch
|
Fix Catch2 Single Header (#10022)
|
2018-12-07 18:13:40 -08:00 |
|
cbench
|
|
|
|
cblas
|
|
|
|
cbtf
|
Update openspeedshop and cbtf-krell module creation code (#9234)
|
2018-10-30 18:41:08 -07:00 |
|
cbtf-argonavis
|
Update openspeedshop and cbtf-krell module creation code (#9234)
|
2018-10-30 18:41:08 -07:00 |
|
cbtf-argonavis-gui
|
Update openspeedshop and cbtf-krell module creation code (#9234)
|
2018-10-30 18:41:08 -07:00 |
|
cbtf-krell
|
Update Dyninst package file for TBB dependency (#9728)
|
2018-11-09 13:35:11 -08:00 |
|
cbtf-lanl
|
Update openspeedshop and cbtf-krell module creation code (#9234)
|
2018-10-30 18:41:08 -07:00 |
|
ccache
|
|
|
|
cctools
|
|
|
|
cdbfasta
|
|
|
|
cdd
|
|
|
|
cddlib
|
|
|
|
cdhit
|
|
|
|
cdo
|
cdo: fix URLs (#10025)
|
2018-12-06 18:04:50 -06:00 |
|
ceed
|
|
|
|
cereal
|
|
|
|
ceres-solver
|
|
|
|
cfitsio
|
|
|
|
cgal
|
|
|
|
cgm
|
|
|
|
cgns
|
CGNS: Allow use of git branch versions (#10156)
|
2018-12-19 20:02:24 -06:00 |
|
channelflow
|
|
|
|
charliecloud
|
add charliecloud 0.9.6 (#10176)
|
2018-12-21 12:17:33 -06:00 |
|
charmpp
|
charm++: add version 6.9.0 (#9827)
|
2018-11-13 10:03:22 -06:00 |
|
chatterbug
|
|
|
|
check
|
|
|
|
chlorop
|
|
|
|
chombo
|
|
|
|
chrpath
|
chrpath: add new package (#9708)
|
2018-11-12 23:21:56 -06:00 |
|
circos
|
circos: new package starting at 0.69-6 (#9761)
|
2018-11-19 20:44:01 -06:00 |
|
cistem
|
|
|
|
citcoms
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
cityhash
|
|
|
|
clamr
|
|
|
|
clapack
|
|
|
|
claw
|
Add new version 1.2.0 to the package (#9837)
|
2018-11-13 09:49:08 -06:00 |
|
cleaveland4
|
|
|
|
cleverleaf
|
|
|
|
clfft
|
|
|
|
clhep
|
|
|
|
clingo
|
|
|
|
cloc
|
cloc: URLs are now consistent (#10068)
|
2018-12-10 14:28:52 +01:00 |
|
cloog
|
|
|
|
cloverleaf
|
|
|
|
cloverleaf3d
|
|
|
|
clp
|
clp: add build_directory, remove old hack (#10112)
|
2018-12-18 08:36:40 -06:00 |
|
clustalo
|
|
|
|
clustalw
|
|
|
|
cmake
|
cmake: add version 3.13.2 (#10092)
|
2018-12-13 17:35:58 -06:00 |
|
cmocka
|
|
|
|
cmor
|
|
|
|
cnmem
|
|
|
|
cnpy
|
|
|
|
cntk
|
|
|
|
cntk1bitsgd
|
|
|
|
codar-cheetah
|
|
|
|
codes
|
|
|
|
coevp
|
|
|
|
cohmm
|
|
|
|
coinhsl
|
|
|
|
colm
|
|
|
|
colordiff
|
|
|
|
comd
|
|
|
|
commons-lang
|
|
|
|
commons-lang3
|
|
|
|
commons-logging
|
|
|
|
compiz
|
|
|
|
compositeproto
|
|
|
|
conduit
|
|
|
|
constype
|
|
|
|
converge
|
|
|
|
coreutils
|
|
|
|
corset
|
|
|
|
cosmomc
|
|
|
|
cosp2
|
|
|
|
cp2k
|
CP2K related fixes and update (#9308)
|
2018-11-20 09:23:01 -08:00 |
|
cppad
|
|
|
|
cppcheck
|
|
|
|
cppgsl
|
|
|
|
cpprestsdk
|
|
|
|
cppunit
|
|
|
|
cppzmq
|
xeus: new package (#9682)
|
2018-10-31 20:23:44 -07:00 |
|
cpu-features
|
|
|
|
cpuinfo
|
|
|
|
cram
|
|
|
|
cryptopp
|
xeus: new package (#9682)
|
2018-10-31 20:23:44 -07:00 |
|
cscope
|
|
|
|
csdp
|
|
|
|
ctffind
|
|
|
|
cub
|
|
|
|
cube
|
|
|
|
cubelib
|
|
|
|
cubew
|
|
|
|
cuda
|
Add CUDA_HOME variable to cuda module file. (#10088)
|
2018-12-13 08:05:13 +01:00 |
|
cuda-memtest
|
|
|
|
cudnn
|
|
|
|
cufflinks
|
|
|
|
cups
|
|
|
|
curl
|
|
|
|
cvs
|
|
|
|
czmq
|
|
|
|
dakota
|
Updated Dakota to 6.9 (#10157)
|
2018-12-19 13:03:14 -06:00 |
|
daligner
|
|
|
|
damageproto
|
|
|
|
damaris
|
damaris: add support for VisIt and Catalyst (#9651)
|
2018-10-26 19:40:25 -07:00 |
|
damselfly
|
|
|
|
darshan-runtime
|
|
|
|
darshan-util
|
|
|
|
dash
|
|
|
|
datamash
|
|
|
|
dataspaces
|
|
|
|
davix
|
|
|
|
dbcsr
|
dbcsr: minor fixes due to upstream changes (#9799)
|
2018-11-15 17:10:50 +01:00 |
|
dbus
|
|
|
|
dcmtk
|
New package: dcmtk (#9716)
|
2018-11-13 00:08:29 -06:00 |
|
dealii
|
dealii: fix build with some Intel compilers (#10188)
|
2018-12-24 18:53:53 -06:00 |
|
dealii-parameter-gui
|
|
|
|
deconseq-standalone
|
|
|
|
dejagnu
|
|
|
|
delly2
|
|
|
|
denovogear
|
|
|
|
dftfe
|
New package: DFT-FE (#9197)
|
2018-10-19 15:04:15 -07:00 |
|
dia
|
|
|
|
dialign-tx
|
|
|
|
diamond
|
DIAMOND: Add version 0.9.23 (#10030)
|
2018-12-05 19:16:51 -06:00 |
|
diffsplice
|
|
|
|
diffutils
|
|
|
|
direnv
|
|
|
|
discovar
|
|
|
|
discovardenovo
|
|
|
|
dislin
|
|
|
|
diy
|
diy: new package (#9628)
|
2018-10-29 10:20:46 +01:00 |
|
dlpack
|
|
|
|
dmd
|
|
|
|
dmlc-core
|
|
|
|
dmtcp
|
|
|
|
dmxproto
|
|
|
|
docbook-xml
|
Add list_url to docbook-xml (#10146)
|
2018-12-19 11:37:54 -06:00 |
|
docbook-xsl
|
Add latest version of docbook-xsl (#10147)
|
2018-12-19 11:37:35 -06:00 |
|
dos2unix
|
|
|
|
dotnet-core-sdk
|
|
|
|
double-conversion
|
|
|
|
doxygen
|
Fix doxygen package (#10021)
|
2018-12-05 19:02:38 -06:00 |
|
dri2proto
|
|
|
|
dri3proto
|
|
|
|
dsdp
|
|
|
|
dsrc
|
|
|
|
dtcmp
|
make dtcmp an autotools spackage (#10095)
|
2018-12-14 09:08:57 -06:00 |
|
dyninst
|
dyninst: patch to build dyninst with older gcc (#10160)
|
2018-12-19 17:24:43 -08:00 |
|
ea-utils
|
|
|
|
easybuild
|
|
|
|
ebms
|
|
|
|
eccodes
|
|
|
|
ecflow
|
Add variant to ecflow to choose whether to use static boost libraries. (#9933)
|
2018-12-17 19:23:53 -06:00 |
|
eclipse-gcj-parser
|
|
|
|
ecp-proxy-apps
|
ecp-proxy-apps: disable building CANDLE Benchmarks by default (#9691)
|
2018-10-31 12:50:37 -06:00 |
|
ed
|
|
|
|
editres
|
|
|
|
eigen
|
|
|
|
elasticsearch
|
|
|
|
elemental
|
|
|
|
elfutils
|
dyninst: overhaul package.py to CMakePackage (#9871)
|
2018-11-21 10:47:19 -08:00 |
|
elk
|
|
|
|
elpa
|
|
|
|
elsd
|
Add new packages for ELSD and ELSDc (#10072)
|
2018-12-13 22:05:24 -06:00 |
|
elsdc
|
Add new packages for ELSD and ELSDc (#10072)
|
2018-12-13 22:05:24 -06:00 |
|
emacs
|
|
|
|
ember
|
|
|
|
emboss
|
|
|
|
encodings
|
|
|
|
energyplus
|
|
|
|
environment-modules
|
|
|
|
eospac
|
eospac version bump (#9763)
|
2018-11-13 10:47:11 -06:00 |
|
er
|
|
|
|
erne
|
erne: new package starting at 2.1.1 (#9676)
|
2018-11-13 11:02:39 -06:00 |
|
es
|
|
|
|
esmf
|
|
|
|
essl
|
|
|
|
ethminer
|
|
|
|
etsf-io
|
|
|
|
everytrace
|
|
|
|
everytrace-example
|
|
|
|
evieext
|
|
|
|
exabayes
|
|
|
|
examinimd
|
|
|
|
exampm
|
|
|
|
exasp2
|
|
|
|
exchanger
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
exmcutils
|
|
|
|
exodusii
|
EXODUS: Update version and dependencies (#9971)
|
2018-12-04 09:48:15 -06:00 |
|
exonerate
|
|
|
|
expat
|
|
|
|
expect
|
|
|
|
express
|
|
|
|
extrae
|
|
|
|
exuberant-ctags
|
|
|
|
eztrace
|
eztrace: add new package (#10060)
|
2018-12-08 01:06:28 -06:00 |
|
f18
|
Add f18 package (#9183)
|
2018-11-28 14:13:30 -06:00 |
|
f90cache
|
|
|
|
fabtests
|
|
|
|
falcon
|
|
|
|
fast-global-file-status
|
|
|
|
fasta
|
|
|
|
fastjar
|
|
|
|
fastmath
|
|
|
|
fastme
|
|
|
|
fastphase
|
|
|
|
fastq-screen
|
|
|
|
fastqc
|
|
|
|
fastqvalidator
|
|
|
|
fasttree
|
|
|
|
fastx-toolkit
|
|
|
|
fenics
|
|
|
|
fermi
|
|
|
|
fermikit
|
|
|
|
fermisciencetools
|
|
|
|
ferret
|
|
|
|
ffmpeg
|
ffmpeg: add version 4.1 (#10015)
|
2018-12-04 17:19:40 -06:00 |
|
fftw
|
Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618)
|
2018-11-09 08:16:11 -08:00 |
|
figtree
|
|
|
|
fimpute
|
|
|
|
findutils
|
|
|
|
fio
|
|
|
|
fish
|
|
|
|
fixesproto
|
|
|
|
flac
|
|
|
|
flang
|
|
|
|
flann
|
|
|
|
flash
|
|
|
|
flatbuffers
|
flatbuffers: add 1.10.0 (#10137)
|
2018-12-18 10:53:02 -06:00 |
|
flatcc
|
new package: flatcc (#9695)
|
2018-11-12 23:11:52 -06:00 |
|
flecsale
|
flecsale: add missing dependencies and fix flecsi runtime model (#9774)
|
2018-11-22 12:38:59 -06:00 |
|
flecsi
|
|
|
|
flex
|
|
|
|
flint
|
|
|
|
flit
|
|
|
|
fltk
|
|
|
|
flux-core
|
flux-core & flux-sched: fix compilation and dependencies (#10049)
|
2018-12-11 22:34:58 -06:00 |
|
flux-sched
|
flux-core & flux-sched: fix compilation and dependencies (#10049)
|
2018-12-11 22:34:58 -06:00 |
|
fluxbox
|
|
|
|
fmt
|
fmt: add new versions and update constraints (#9634)
|
2018-10-26 18:08:56 -07:00 |
|
foam-extend
|
utils: merge spack.environment into spack.util.environment
|
2018-11-09 00:31:24 -08:00 |
|
folly
|
|
|
|
font-adobe-75dpi
|
Fix #9673 : build fonts on powerpc architecture (#9683)
|
2018-11-13 11:01:46 -06:00 |
|
font-adobe-100dpi
|
Fix #9673 : build fonts on powerpc architecture (#9683)
|
2018-11-13 11:01:46 -06:00 |
|
font-adobe-utopia-75dpi
|
|
|
|
font-adobe-utopia-100dpi
|
|
|
|
font-adobe-utopia-type1
|
|
|
|
font-alias
|
|
|
|
font-arabic-misc
|
|
|
|
font-bh-75dpi
|
|
|
|
font-bh-100dpi
|
|
|
|
font-bh-lucidatypewriter-75dpi
|
|
|
|
font-bh-lucidatypewriter-100dpi
|
|
|
|
font-bh-ttf
|
|
|
|
font-bh-type1
|
|
|
|
font-bitstream-75dpi
|
|
|
|
font-bitstream-100dpi
|
|
|
|
font-bitstream-speedo
|
|
|
|
font-bitstream-type1
|
|
|
|
font-cronyx-cyrillic
|
|
|
|
font-cursor-misc
|
|
|
|
font-daewoo-misc
|
|
|
|
font-dec-misc
|
|
|
|
font-ibm-type1
|
|
|
|
font-isas-misc
|
|
|
|
font-jis-misc
|
|
|
|
font-micro-misc
|
|
|
|
font-misc-cyrillic
|
|
|
|
font-misc-ethiopic
|
|
|
|
font-misc-meltho
|
|
|
|
font-misc-misc
|
|
|
|
font-mutt-misc
|
|
|
|
font-schumacher-misc
|
|
|
|
font-screen-cyrillic
|
|
|
|
font-sony-misc
|
|
|
|
font-sun-misc
|
|
|
|
font-util
|
|
|
|
font-winitzki-cyrillic
|
|
|
|
font-xfree86-type1
|
|
|
|
fontcacheproto
|
|
|
|
fontconfig
|
|
|
|
fontsproto
|
|
|
|
fonttosfnt
|
|
|
|
fp16
|
|
|
|
fpc
|
|
|
|
fr-hit
|
|
|
|
freebayes
|
|
|
|
freeglut
|
|
|
|
freetype
|
Add patch to fix windows.h include in freetype (#10075)
|
2018-12-17 13:00:43 -06:00 |
|
freexl
|
libspatialite: new package (#9923)
|
2018-11-22 13:54:52 -06:00 |
|
fseq
|
|
|
|
fsl
|
utils: merge spack.environment into spack.util.environment
|
2018-11-09 00:31:24 -08:00 |
|
fslsfonts
|
|
|
|
fstobdf
|
|
|
|
fstrack
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
ftgl
|
|
|
|
funhpc
|
|
|
|
fyba
|
|
|
|
gapbs
|
|
|
|
gapcloser
|
|
|
|
gapfiller
|
|
|
|
gasnet
|
|
|
|
gatk
|
GATK: Add version 4.0.11.0 (#9953)
|
2018-11-26 14:54:05 -06:00 |
|
gaussian
|
|
|
|
gawk
|
|
|
|
gblocks
|
|
|
|
gcc
|
gcc: fix sys_ustat.h patch for gcc 4.8 and 4.9 (#10081)
|
2018-12-11 22:54:12 -06:00 |
|
gccmakedep
|
|
|
|
gccxml
|
|
|
|
gconf
|
|
|
|
gcta
|
|
|
|
gdal
|
|
|
|
gdb
|
|
|
|
gdbm
|
gdbm: add 1.18.1 (#9757)
|
2018-11-13 10:50:30 -06:00 |
|
gdk-pixbuf
|
Add latest version of gdk-pixbuf (#10126)
|
2018-12-17 13:04:40 -06:00 |
|
gdl
|
GDL: python integration fixes (#9936)
|
2018-12-17 12:47:16 -06:00 |
|
geant4
|
|
|
|
gearshifft
|
|
|
|
gemmlowp
|
|
|
|
genemark-et
|
|
|
|
genomefinisher
|
|
|
|
genometools
|
|
|
|
geopm
|
|
|
|
geos
|
|
|
|
gettext
|
|
|
|
gflags
|
|
|
|
ghost
|
|
|
|
ghostscript
|
Add latest version of ghostscript (#10123)
|
2018-12-17 13:04:16 -06:00 |
|
ghostscript-fonts
|
|
|
|
giflib
|
|
|
|
git
|
git: add version 2.20.1 (#10130)
|
2018-12-17 17:36:57 -06:00 |
|
git-imerge
|
|
|
|
git-lfs
|
|
|
|
gl2ps
|
|
|
|
glew
|
|
|
|
glfmultiples
|
|
|
|
glib
|
Add libiconv variant to glib (#10165)
|
2018-12-21 11:33:28 -06:00 |
|
glibmm
|
|
|
|
glimmer
|
|
|
|
glm
|
|
|
|
global
|
|
|
|
globalarrays
|
|
|
|
globus-toolkit
|
globus-toolkit: add missing pkgconfig dependency (#9775)
|
2018-11-15 17:54:22 +01:00 |
|
glog
|
|
|
|
gloo
|
|
|
|
glpk
|
|
|
|
glproto
|
|
|
|
glvis
|
|
|
|
gmake
|
|
|
|
gmap-gsnap
|
|
|
|
gmime
|
|
|
|
gmodel
|
|
|
|
gmp
|
|
|
|
gmsh
|
|
|
|
gmt
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
gnat
|
|
|
|
gnu-prolog
|
|
|
|
gnupg
|
|
|
|
gnuplot
|
gnuplot: add X11 dependency and QT terminal (#9722)
|
2018-11-12 18:45:27 -06:00 |
|
gnutls
|
|
|
|
go
|
go: add 1.11.2 (#9948)
|
2018-11-26 11:33:55 -06:00 |
|
go-bootstrap
|
|
|
|
gobject-introspection
|
|
|
|
googletest
|
Updates to Google Test: (#10079)
|
2018-12-14 13:23:08 -06:00 |
|
gotcha
|
|
|
|
gource
|
|
|
|
gperf
|
|
|
|
gperftools
|
|
|
|
gpgme
|
gpgme: new package (#10174)
|
2018-12-21 12:17:45 -06:00 |
|
gplates
|
gplates package: improvements (#9735)
|
2018-11-12 23:56:59 -06:00 |
|
grackle
|
|
|
|
gradle
|
|
|
|
grandr
|
|
|
|
graph500
|
|
|
|
graphicsmagick
|
|
|
|
graphlib
|
|
|
|
graphmap
|
|
|
|
graphviz
|
|
|
|
grass
|
|
|
|
grib-api
|
|
|
|
grnboost
|
|
|
|
groff
|
|
|
|
gromacs
|
gromacs: added 2018.[34] (#9828)
|
2018-11-13 10:02:59 -06:00 |
|
gsl
|
|
|
|
gslib
|
|
|
|
gtkmm
|
|
|
|
gtkorvo-atl
|
|
|
|
gtkorvo-cercs-env
|
|
|
|
gtkorvo-dill
|
|
|
|
gtkorvo-enet
|
|
|
|
gtkplus
|
package/gtkplus: disable gtk-docs (#9897)
|
2018-11-19 20:38:34 -06:00 |
|
gts
|
|
|
|
guidance
|
|
|
|
guile
|
plumed: libmatheval support (#9586)
|
2018-10-19 18:18:56 -07:00 |
|
gurobi
|
|
|
|
h5hut
|
|
|
|
h5part
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
fetch_strategy: improve GitFetchStrategy (#10153)
|
2018-12-19 14:33:58 -08:00 |
|
hacckernels
|
|
|
|
hadoop
|
|
|
|
halc
|
|
|
|
hapcut2
|
|
|
|
hapdip
|
|
|
|
haploview
|
|
|
|
harfbuzz
|
package/harfbuzz: disable building of gtk-docs, add new version (#9891)
|
2018-11-19 20:42:08 -06:00 |
|
harminv
|
|
|
|
hc
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
hdf
|
|
|
|
hdf5
|
hdf5: add version 1.8.21 (#9952)
|
2018-11-26 12:56:44 -06:00 |
|
hdf5-blosc
|
|
|
|
help2man
|
|
|
|
henson
|
henson: new package (#9657)
|
2018-11-01 18:15:12 +01:00 |
|
hepmc
|
|
|
|
heppdt
|
|
|
|
hic-pro
|
|
|
|
highfive
|
|
|
|
highwayhash
|
|
|
|
hiop
|
|
|
|
hisat2
|
|
|
|
hisea
|
|
|
|
hmmer
|
|
|
|
homer
|
new package: homer (starting at 4.9.1) (#9669)
|
2018-11-02 18:18:05 -07:00 |
|
hoomd-blue
|
hoomd-blue: fixing issue during build with newer cmakes (#9543)
|
2018-10-29 13:46:35 -07:00 |
|
hpccg
|
|
|
|
hpctoolkit
|
hpctoolkit: overhaul to use spack dependencies (#9946)
|
2018-11-30 18:11:12 -08:00 |
|
hpgmg
|
|
|
|
hpl
|
|
|
|
hpx
|
|
|
|
hpx5
|
|
|
|
hsakmt
|
|
|
|
hstr
|
|
|
|
htop
|
|
|
|
htslib
|
|
|
|
httpie
|
|
|
|
hub
|
|
|
|
hunspell
|
|
|
|
hwloc
|
Hwloc and numactl updates (#9987)
|
2018-12-05 10:26:53 +01:00 |
|
hybpiper
|
new version (#9752)
|
2018-11-13 10:53:47 -06:00 |
|
hydra
|
|
|
|
hydrogen
|
Update LBANN generator and bug fix (#9906)
|
2018-12-10 15:12:43 -08:00 |
|
hypre
|
hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832)
|
2018-11-13 09:54:09 -06:00 |
|
i3
|
|
|
|
ibmisc
|
|
|
|
iceauth
|
|
|
|
icedtea
|
|
|
|
icet
|
|
|
|
ico
|
|
|
|
icu4c
|
|
|
|
id3lib
|
|
|
|
idba
|
|
|
|
igraph
|
|
|
|
igvtools
|
|
|
|
ilmbase
|
version/dependency updates for ilmbase and openexr (#9714)
|
2018-11-12 23:18:54 -06:00 |
|
image-magick
|
|
|
|
imake
|
|
|
|
imp
|
|
|
|
impute2
|
|
|
|
infernal
|
|
|
|
inputproto
|
|
|
|
intel
|
intel-parallel-studio: add missing updates to 2019.1 (#9941)
|
2018-11-24 15:44:57 -06:00 |
|
intel-daal
|
Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899)
|
2018-11-20 09:30:53 -06:00 |
|
intel-gpu-tools
|
|
|
|
intel-ipp
|
Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899)
|
2018-11-20 09:30:53 -06:00 |
|
intel-mkl
|
Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899)
|
2018-11-20 09:30:53 -06:00 |
|
intel-mkl-dnn
|
|
|
|
intel-mpi
|
Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899)
|
2018-11-20 09:30:53 -06:00 |
|
intel-parallel-studio
|
intel-parallel-studio: add missing updates to 2019.1 (#9941)
|
2018-11-24 15:44:57 -06:00 |
|
intel-tbb
|
Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899)
|
2018-11-20 09:30:53 -06:00 |
|
intel-xed
|
|
|
|
intltool
|
|
|
|
ior
|
|
|
|
iozone
|
|
|
|
iperf2
|
|
|
|
iperf3
|
|
|
|
ipopt
|
|
|
|
isaac
|
|
|
|
isaac-server
|
|
|
|
isl
|
GCC: ISL and mpfr upper bounds (#9513)
|
2018-10-30 13:26:41 -07:00 |
|
itstool
|
|
|
|
itsx
|
|
|
|
jackcess
|
|
|
|
jags
|
|
|
|
jansson
|
|
|
|
jasper
|
|
|
|
jbigkit
|
|
|
|
jchronoss
|
|
|
|
jdk
|
|
|
|
jellyfish
|
|
|
|
jemalloc
|
|
|
|
jmol
|
|
|
|
jq
|
|
|
|
json-c
|
|
|
|
json-cwx
|
|
|
|
json-glib
|
|
|
|
jsoncpp
|
|
|
|
judy
|
|
|
|
julia
|
|
|
|
k8
|
|
|
|
kahip
|
|
|
|
kaiju
|
|
|
|
kaks-calculator
|
|
|
|
kaldi
|
|
|
|
kallisto
|
updated checksum for kallisto (#10158)
|
2018-12-19 17:06:33 -06:00 |
|
karma
|
new package: karma (#9571)
|
2018-10-25 17:53:22 -07:00 |
|
kbproto
|
|
|
|
kdiff3
|
Expand dependency on qt to allow qt4 (#9964)
|
2018-12-04 13:37:37 +01:00 |
|
kealib
|
|
|
|
kentutils
|
|
|
|
kibana
|
|
|
|
kim-api
|
|
|
|
kmergenie
|
|
|
|
kokkos
|
kokkos: add pic option (#9643)
|
2018-10-26 18:13:48 -07:00 |
|
kraken
|
|
|
|
krb5
|
krb5: add missing bison dependency for yacc (#9778)
|
2018-11-15 17:54:51 +01:00 |
|
krims
|
|
|
|
kripke
|
|
|
|
kvasir-mpl
|
|
|
|
kvtree
|
|
|
|
laghos
|
|
|
|
lammps
|
lammps: add new stable version (#10086)
|
2018-12-12 11:08:59 -06:00 |
|
last
|
|
|
|
lastz
|
new package: lastz (starting at 1.04.00) (#9593)
|
2018-10-19 17:57:46 -07:00 |
|
latte
|
Fixing problems with lammps dependencies voropp and latte (#9909)
|
2018-11-27 16:55:21 -07:00 |
|
launchmon
|
|
|
|
lazyten
|
|
|
|
lbann
|
Update LBANN generator and bug fix (#9906)
|
2018-12-10 15:12:43 -08:00 |
|
lbxproxy
|
|
|
|
lbzip2
|
lbzip2: add new package (#9688)
|
2018-10-31 18:08:00 +01:00 |
|
lcals
|
|
|
|
lcms
|
|
|
|
ldc
|
|
|
|
ldc-bootstrap
|
|
|
|
legion
|
|
|
|
lemon
|
LEMON: Create new package (#10077)
|
2018-12-11 23:08:45 -06:00 |
|
leveldb
|
|
|
|
lftp
|
|
|
|
libaec
|
|
|
|
libaio
|
|
|
|
libapplewm
|
|
|
|
libarchive
|
|
|
|
libassuan
|
|
|
|
libatomic-ops
|
Add latest version of libatomic-ops (#10099)
|
2018-12-14 21:09:04 -06:00 |
|
libbeagle
|
|
|
|
libbeato
|
|
|
|
libbsd
|
Restrict patch to oldest version of libbsd (#10145)
|
2018-12-19 11:37:11 -06:00 |
|
libbson
|
|
|
|
libcanberra
|
|
|
|
libcap
|
|
|
|
libceed
|
|
|
|
libcerf
|
|
|
|
libcheck
|
|
|
|
libcint
|
|
|
|
libcircle
|
|
|
|
libconfig
|
|
|
|
libcroco
|
|
|
|
libctl
|
|
|
|
libdivsufsort
|
|
|
|
libdmx
|
|
|
|
libdrm
|
|
|
|
libdwarf
|
|
|
|
libedit
|
|
|
|
libelf
|
|
|
|
libemos
|
|
|
|
libepoxy
|
|
|
|
libev
|
|
|
|
libevent
|
libevent: add 2.1.8 and 2.0.22 (#9777)
|
2018-11-13 09:51:26 -06:00 |
|
libevpath
|
|
|
|
libfabric
|
|
|
|
libffi
|
|
|
|
libffs
|
|
|
|
libfontenc
|
|
|
|
libfs
|
|
|
|
libgcrypt
|
|
|
|
libgd
|
|
|
|
libgeotiff
|
|
|
|
libgit2
|
|
|
|
libgpg-error
|
|
|
|
libgpuarray
|
|
|
|
libgridxc
|
|
|
|
libgtextutils
|
|
|
|
libharu
|
|
|
|
libhio
|
|
|
|
libiberty
|
|
|
|
libice
|
|
|
|
libiconv
|
|
|
|
libint
|
|
|
|
libjpeg
|
|
|
|
libjpeg-turbo
|
|
|
|
libksba
|
|
|
|
liblbxutil
|
|
|
|
liblockfile
|
|
|
|
libmatheval
|
plumed: libmatheval support (#9586)
|
2018-10-19 18:18:56 -07:00 |
|
libmaxminddb
|
|
|
|
libmesh
|
libMesh: new version and dependency updates (#9709)
|
2018-11-12 23:29:58 -06:00 |
|
libmng
|
|
|
|
libmongoc
|
libmongoc: updated versions (#9877)
|
2018-11-18 20:35:24 -06:00 |
|
libmonitor
|
|
|
|
libnbc
|
|
|
|
libnl
|
|
|
|
libnova
|
|
|
|
libogg
|
|
|
|
liboldx
|
|
|
|
libpcap
|
|
|
|
libpciaccess
|
|
|
|
libpfm4
|
|
|
|
libpipeline
|
|
|
|
libpng
|
|
|
|
libpsl
|
|
|
|
libpthread-stubs
|
|
|
|
libquo
|
|
|
|
librom
|
|
|
|
libsharp
|
|
|
|
libshm
|
|
|
|
libsigcpp
|
Add latest version of libsigcpp (#10103)
|
2018-12-14 21:09:33 -06:00 |
|
libsigsegv
|
|
|
|
libsm
|
|
|
|
libsodium
|
|
|
|
libspatialindex
|
|
|
|
libspatialite
|
libspatialite: new package (#9923)
|
2018-11-22 13:54:52 -06:00 |
|
libsplash
|
|
|
|
libssh
|
libssh: fix fetching and add 0.8.5 (#9779)
|
2018-11-13 09:51:57 -06:00 |
|
libssh2
|
|
|
|
libsvm
|
|
|
|
libszip
|
|
|
|
libtermkey
|
|
|
|
libtiff
|
|
|
|
libtool
|
|
|
|
libunistring
|
|
|
|
libunwind
|
libunwind: add version for current snapshot (#9770)
|
2018-11-14 18:56:52 -06:00 |
|
libuuid
|
|
|
|
libuv
|
|
|
|
libvorbis
|
|
|
|
libvterm
|
Added missing libtool dependencies to libvterm and unibilium (#10007)
|
2018-12-04 13:01:37 +01:00 |
|
libwebsockets
|
|
|
|
libwindowswm
|
|
|
|
libx11
|
|
|
|
libxau
|
|
|
|
libxaw
|
|
|
|
libxaw3d
|
|
|
|
libxc
|
CP2K related fixes and update (#9308)
|
2018-11-20 09:23:01 -08:00 |
|
libxcb
|
|
|
|
libxcomposite
|
|
|
|
libxcursor
|
|
|
|
libxdamage
|
|
|
|
libxdmcp
|
Add missing libbsd dependency to libxdmcp (#10122)
|
2018-12-17 13:04:00 -06:00 |
|
libxevie
|
|
|
|
libxext
|
|
|
|
libxfixes
|
|
|
|
libxfont
|
|
|
|
libxfont2
|
|
|
|
libxfontcache
|
|
|
|
libxft
|
|
|
|
libxi
|
|
|
|
libxinerama
|
|
|
|
libxkbcommon
|
Add latest version of libxkbcommon (#10134)
|
2018-12-17 19:27:58 -06:00 |
|
libxkbfile
|
|
|
|
libxkbui
|
|
|
|
libxml2
|
Fix libxml2+python and libxslt+python import tests (#10196)
|
2018-12-26 10:36:59 -06:00 |
|
libxmu
|
|
|
|
libxp
|
|
|
|
libxpm
|
|
|
|
libxpresent
|
|
|
|
libxprintapputil
|
|
|
|
libxprintutil
|
|
|
|
libxrandr
|
|
|
|
libxrender
|
|
|
|
libxres
|
|
|
|
libxscrnsaver
|
|
|
|
libxshmfence
|
|
|
|
libxslt
|
Fix libxml2+python and libxslt+python import tests (#10196)
|
2018-12-26 10:36:59 -06:00 |
|
libxsmm
|
CP2K related fixes and update (#9308)
|
2018-11-20 09:23:01 -08:00 |
|
libxstream
|
|
|
|
libxt
|
|
|
|
libxtrap
|
|
|
|
libxtst
|
|
|
|
libxv
|
|
|
|
libxvmc
|
|
|
|
libxxf86dga
|
|
|
|
libxxf86misc
|
|
|
|
libxxf86vm
|
|
|
|
libyogrt
|
|
|
|
libzip
|
|
|
|
lighttpd
|
|
|
|
likwid
|
|
|
|
linkphase3
|
|
|
|
linux-headers
|
|
|
|
listres
|
|
|
|
llvm
|
LLVM: add older version and gcc constraint (#9614)
|
2018-10-25 18:05:26 -07:00 |
|
llvm-openmp-ompt
|
|
|
|
lmdb
|
lmdb: add 0.9.22 (#9759)
|
2018-11-13 10:49:24 -06:00 |
|
lmod
|
|
|
|
lndir
|
|
|
|
log4cplus
|
|
|
|
log4cxx
|
|
|
|
loki
|
|
|
|
lordec
|
|
|
|
lrslib
|
|
|
|
lrzip
|
|
|
|
lsof
|
|
|
|
ltrace
|
|
|
|
lua
|
|
|
|
lua-bitlib
|
|
|
|
lua-jit
|
|
|
|
lua-lpeg
|
|
|
|
lua-luafilesystem
|
|
|
|
lua-luaposix
|
|
|
|
lua-mpack
|
|
|
|
luit
|
|
|
|
lulesh
|
|
|
|
lumpy-sv
|
|
|
|
lwgrp
|
|
|
|
lwm2
|
|
|
|
lz4
|
|
|
|
lzma
|
|
|
|
lzo
|
|
|
|
m4
|
|
|
|
macsio
|
|
|
|
mad-numdiff
|
|
|
|
mafft
|
|
|
|
magics
|
|
|
|
magma
|
|
|
|
makedepend
|
|
|
|
mallocmc
|
|
|
|
man-db
|
man-db: add missing gdbm dependency (#9751)
|
2018-11-13 09:41:43 -06:00 |
|
manta
|
manta: Add version 1.5.0 and add missing zlib dependency (#10178)
|
2018-12-24 21:04:18 +01:00 |
|
mapserver
|
mapserver: new package (#10067)
|
2018-12-19 10:04:25 +01:00 |
|
maq
|
|
|
|
mariadb
|
|
|
|
masa
|
|
|
|
masurca
|
|
|
|
matio
|
MATIO: New versions (#9993)
|
2018-12-04 08:53:15 -06:00 |
|
matlab
|
|
|
|
maven
|
|
|
|
maverick
|
|
|
|
mawk
|
mawk: added 1.3.4_p20171017 (#10197)
|
2018-12-26 08:41:26 -06:00 |
|
mbedtls
|
|
|
|
mc
|
mc: add version 4.8.21 (#9943)
|
2018-11-24 17:42:46 -06:00 |
|
mcl
|
|
|
|
mdtest
|
|
|
|
med
|
|
|
|
meep
|
|
|
|
mefit
|
|
|
|
megahit
|
|
|
|
memaxes
|
|
|
|
meme
|
|
|
|
memkind
|
|
|
|
meraculous
|
|
|
|
mercurial
|
|
|
|
mercury
|
Package: Mercury (#9903)
|
2018-11-20 11:14:30 -06:00 |
|
mesa
|
|
|
|
mesa-glu
|
|
|
|
meshkit
|
|
|
|
meson
|
Add latest version of meson (#10104)
|
2018-12-14 09:10:55 -06:00 |
|
mesquite
|
|
|
|
metabat
|
metabat: Add version 2.11.2 (#9950)
|
2018-11-26 11:32:14 -06:00 |
|
metaphysicl
|
|
|
|
metis
|
metis: Fix issues with gcc6 and misleading indentation (#10058)
|
2018-12-09 13:08:38 -06:00 |
|
mfem
|
|
|
|
microbiomeutil
|
|
|
|
migrate
|
migrate: new package starting at 3.6.11 (#9707)
|
2018-11-12 23:05:54 -06:00 |
|
minced
|
minced: Add version 0.1.6 (#9951)
|
2018-11-26 14:22:17 -06:00 |
|
mindthegap
|
|
|
|
miniaero
|
|
|
|
miniamr
|
|
|
|
miniasm
|
|
|
|
miniconda2
|
Fix issue with miniconda attempting to install the incorrect version (#9589)
|
2018-10-25 18:16:23 -07:00 |
|
miniconda3
|
Fix issue with miniconda attempting to install the incorrect version (#9589)
|
2018-10-25 18:16:23 -07:00 |
|
minife
|
|
|
|
minighost
|
|
|
|
minigmg
|
|
|
|
minimap2
|
minimap2: Add versions 2.10 and 2.14 (#9818)
|
2018-11-13 10:08:42 -06:00 |
|
minimd
|
|
|
|
miniqmc
|
|
|
|
minisign
|
|
|
|
minismac2d
|
|
|
|
minitri
|
|
|
|
minivite
|
|
|
|
minixyce
|
|
|
|
minuit
|
|
|
|
mira
|
|
|
|
mirdeep2
|
|
|
|
mitofates
|
|
|
|
mitos
|
|
|
|
mixcr
|
mixcr: Added a new package for MiXCR. (#9864)
|
2018-11-17 21:19:04 -06:00 |
|
mkfontdir
|
|
|
|
mkfontscale
|
|
|
|
mlhka
|
|
|
|
moab
|
fix moab installation for version 5.0.2 removed from ftp (#10201)
|
2018-12-26 16:18:32 -06:00 |
|
modern-wheel
|
|
|
|
mofem-cephas
|
mofem: add new releases and minor changes (#9138)
|
2018-12-10 14:33:31 +01:00 |
|
mofem-fracture-module
|
mofem: add new releases and minor changes (#9138)
|
2018-12-10 14:33:31 +01:00 |
|
mofem-minimal-surface-equation
|
mofem: add new releases and minor changes (#9138)
|
2018-12-10 14:33:31 +01:00 |
|
mofem-users-modules
|
mofem: add new releases and minor changes (#9138)
|
2018-12-10 14:33:31 +01:00 |
|
molcas
|
|
|
|
mongo-cxx-driver
|
new package: mongo-cxx-driver (#9880)
|
2018-11-19 13:19:19 -06:00 |
|
mono
|
|
|
|
mosh
|
|
|
|
mothur
|
|
|
|
motif
|
|
|
|
motioncor2
|
|
|
|
mount-point-attributes
|
|
|
|
mozjs
|
|
|
|
mpark-variant
|
|
|
|
mpc
|
|
|
|
mpe2
|
|
|
|
mpest
|
|
|
|
mpfr
|
|
|
|
mpibash
|
|
|
|
mpiblast
|
|
|
|
mpich
|
Add MPICH version 3.3 (#9915)
|
2018-11-21 14:42:52 -06:00 |
|
mpifileutils
|
fix for mpifileutils package (#10142)
|
2018-12-18 21:51:24 -06:00 |
|
mpilander
|
|
|
|
mpileaks
|
|
|
|
mpip
|
|
|
|
mpir
|
|
|
|
mpix-launch-swift
|
|
|
|
mrbayes
|
|
|
|
mrnet
|
|
|
|
mrtrix3
|
|
|
|
mscgen
|
Fix pkg-config dependencies (#9738)
|
2018-11-13 00:01:41 -06:00 |
|
msgpack-c
|
|
|
|
mshadow
|
|
|
|
msmc
|
new package: msmc (starting at 1.1.0) (#9654)
|
2018-10-26 18:23:45 -07:00 |
|
multitail
|
|
|
|
multitime
|
multitime: new package (#9929)
|
2018-11-22 12:39:51 -06:00 |
|
multiverso
|
|
|
|
mummer
|
|
|
|
mumps
|
|
|
|
munge
|
munge: update versions and url format to reflect switch to .xz format… (#9916)
|
2018-11-22 13:13:40 -06:00 |
|
muparser
|
muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake (#9724)
|
2018-11-08 10:05:52 +01:00 |
|
muscle
|
|
|
|
muse
|
|
|
|
muster
|
|
|
|
mvapich2
|
|
|
|
mxml
|
|
|
|
mxnet
|
|
|
|
nag
|
nag: fix NAG Fortran Compiler MD5 checksum for 6.1; add 6.2 checksum (#9617)
|
2018-10-25 18:14:30 -07:00 |
|
nalu
|
Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)
|
2018-10-24 14:39:12 +02:00 |
|
nalu-wind
|
Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)
|
2018-10-24 14:39:12 +02:00 |
|
namd
|
|
|
|
nano
|
|
|
|
nanoflann
|
|
|
|
nanopb
|
|
|
|
nasm
|
|
|
|
nauty
|
|
|
|
ncbi-magicblast
|
|
|
|
ncbi-rmblastn
|
|
|
|
ncbi-toolkit
|
|
|
|
nccl
|
Add latest version of NCCL (#10194)
|
2018-12-24 17:27:15 -06:00 |
|
nccmp
|
|
|
|
ncdu
|
|
|
|
ncftp
|
|
|
|
ncl
|
ncl: Add 6.5.0 (#9736)
|
2018-11-08 10:03:29 +01:00 |
|
nco
|
|
|
|
ncurses
|
|
|
|
ncview
|
|
|
|
ndiff
|
|
|
|
nek5000
|
|
|
|
nekbone
|
|
|
|
nekcem
|
|
|
|
nektar
|
|
|
|
neovim
|
|
|
|
nest
|
|
|
|
netcdf
|
NETCDF: Add new versions and update url (#9970)
|
2018-12-04 15:03:25 +01:00 |
|
netcdf-cxx
|
|
|
|
netcdf-cxx4
|
Add 'pic' variant to netcdf packages (#9605)
|
2018-11-12 23:54:11 -06:00 |
|
netcdf-fortran
|
netcdf-fortran: add LDFLAGS to fix contents of libnetcdff.la. (#9647)
|
2018-11-14 09:40:16 -06:00 |
|
netgauge
|
|
|
|
netgen
|
|
|
|
netlib-lapack
|
|
|
|
netlib-scalapack
|
|
|
|
netlib-xblas
|
|
|
|
nettle
|
|
|
|
neuron
|
|
|
|
nextflow
|
|
|
|
nfft
|
|
|
|
nghttp2
|
|
|
|
nginx
|
nginx: add 1.15.6 (#9780)
|
2018-11-13 10:25:00 -06:00 |
|
ngmlr
|
|
|
|
ninja
|
|
|
|
ninja-fortran
|
|
|
|
nlohmann-json
|
nlohmann-json: add new version 3.4.0 (#9692)
|
2018-11-12 23:08:40 -06:00 |
|
nlopt
|
|
|
|
nmap
|
|
|
|
nnvm
|
|
|
|
node-js
|
node-js: add 10.13.0 and 11.1.0 (#9781)
|
2018-11-13 11:39:52 -06:00 |
|
notmuch
|
|
|
|
npb
|
|
|
|
npm
|
|
|
|
npth
|
|
|
|
nspr
|
|
|
|
numactl
|
Hwloc and numactl updates (#9987)
|
2018-12-05 10:26:53 +01:00 |
|
numdiff
|
|
|
|
nut
|
|
|
|
nvptx-tools
|
|
|
|
nwchem
|
|
|
|
nyancat
|
New Package: Nyancat (#9819)
|
2018-11-13 10:07:54 -06:00 |
|
ocaml
|
|
|
|
occa
|
|
|
|
oce
|
|
|
|
oclint
|
|
|
|
oclock
|
|
|
|
octave
|
Updated octave and gnuplot versions (#9660)
|
2018-10-29 09:32:30 +01:00 |
|
octave-optim
|
|
|
|
octave-splines
|
|
|
|
octave-struct
|
|
|
|
octopus
|
|
|
|
of-adios-write
|
|
|
|
of-catalyst
|
openFOAM-paraview-catalyst (#10129)
|
2018-12-23 13:40:25 -06:00 |
|
of-precice
|
|
|
|
omega-h
|
|
|
|
ompss
|
|
|
|
ompt-openmp
|
|
|
|
oniguruma
|
|
|
|
ont-albacore
|
|
|
|
opa-psm2
|
|
|
|
opam
|
|
|
|
opari2
|
|
|
|
openbabel
|
|
|
|
openblas
|
openblas: add version 0.3.4 (#10016)
|
2018-12-05 08:41:58 -06:00 |
|
opencoarrays
|
|
|
|
opencv
|
|
|
|
openexr
|
version/dependency updates for ilmbase and openexr (#9714)
|
2018-11-12 23:18:54 -06:00 |
|
openfast
|
Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)
|
2018-10-24 14:39:12 +02:00 |
|
openfoam-com
|
openFOAM-paraview-catalyst (#10129)
|
2018-12-23 13:40:25 -06:00 |
|
openfoam-org
|
|
|
|
openfst
|
|
|
|
opengl
|
|
|
|
openglu
|
|
|
|
openimageio
|
New package: openimageio (#9715)
|
2018-11-13 00:14:29 -06:00 |
|
openjpeg
|
|
|
|
openmc
|
|
|
|
openmpi
|
OpenMPI: adding static libraries with slurm support for latest versions. (#10055)
|
2018-12-08 13:49:09 +01:00 |
|
opennurbs
|
|
|
|
openpmd-api
|
|
|
|
openscenegraph
|
|
|
|
openslide
|
|
|
|
openspeedshop
|
Add missing module env variable setting causing OSS to fail. (#10182)
|
2018-12-22 17:24:44 -06:00 |
|
openspeedshop-utils
|
Update Dyninst package file for TBB dependency (#9728)
|
2018-11-09 13:35:11 -08:00 |
|
openssh
|
openssh: add 7.9p1 (#9782)
|
2018-11-13 09:41:17 -06:00 |
|
openssl
|
openssl: make 1.1.1 the default version (#9836)
|
2018-11-19 20:46:38 -06:00 |
|
opium
|
|
|
|
optional-lite
|
Add new versions of optional-lite and string-view-lite (#10179)
|
2018-12-27 17:03:21 +01:00 |
|
opus
|
|
|
|
orca
|
orca: new package starting at 4.0.1.2 (#9297)
|
2018-10-29 14:49:58 -05:00 |
|
orfm
|
|
|
|
orthofinder
|
|
|
|
orthomcl
|
|
|
|
osu-micro-benchmarks
|
|
|
|
otf
|
|
|
|
otf2
|
|
|
|
p4est
|
p4est: fix a typo (#9932)
|
2018-11-24 17:45:04 -06:00 |
|
p7zip
|
|
|
|
pacbio-daligner
|
|
|
|
pacbio-damasker
|
|
|
|
pacbio-dazz-db
|
|
|
|
pacbio-dextractor
|
|
|
|
packmol
|
Packmol: a new package. (#9687)
|
2018-10-31 17:32:09 +01:00 |
|
pacvim
|
|
|
|
pagit
|
|
|
|
pagmo
|
|
|
|
paml
|
|
|
|
panda
|
|
|
|
pandaseq
|
|
|
|
pango
|
package/pango: disable gtk-docs (#9896)
|
2018-11-19 20:38:52 -06:00 |
|
pangomm
|
|
|
|
papi
|
|
|
|
papyrus
|
|
|
|
paradiseo
|
|
|
|
parallel
|
|
|
|
parallel-netcdf
|
PNETCDF: Update with current versions (#9982)
|
2018-12-04 08:31:41 -06:00 |
|
paraver
|
|
|
|
paraview
|
openFOAM-paraview-catalyst (#10129)
|
2018-12-23 13:40:25 -06:00 |
|
parmetis
|
|
|
|
parmgridgen
|
|
|
|
parquet
|
|
|
|
parsimonator
|
|
|
|
parsplice
|
|
|
|
partitionfinder
|
|
|
|
patch
|
|
|
|
patchelf
|
|
|
|
pathfinder
|
|
|
|
pax-utils
|
|
|
|
pbbam
|
|
|
|
pbmpi
|
|
|
|
pbsuite
|
pbsuite: pythonpath should be prepended not set (#10113)
|
2018-12-14 18:12:51 -08:00 |
|
pcma
|
|
|
|
pcre
|
|
|
|
pcre2
|
|
|
|
pdf2svg
|
|
|
|
pdftk
|
|
|
|
pdsh
|
|
|
|
pdt
|
|
|
|
pegtl
|
|
|
|
pennant
|
|
|
|
percept
|
|
|
|
perl
|
|
|
|
perl-algorithm-diff
|
|
|
|
perl-app-cmd
|
|
|
|
perl-array-utils
|
|
|
|
perl-b-hooks-endofscope
|
|
|
|
perl-bio-perl
|
|
|
|
perl-bit-vector
|
|
|
|
perl-cairo
|
|
|
|
perl-capture-tiny
|
|
|
|
perl-carp-clan
|
|
|
|
perl-cgi
|
|
|
|
perl-class-data-inheritable
|
|
|
|
perl-class-inspector
|
|
|
|
perl-class-load
|
|
|
|
perl-class-load-xs
|
|
|
|
perl-clone
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-compress-raw-bzip2
|
|
|
|
perl-compress-raw-zlib
|
|
|
|
perl-config-general
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-contextual-return
|
|
|
|
perl-cpan-meta-check
|
|
|
|
perl-data-optlist
|
|
|
|
perl-data-stag
|
|
|
|
perl-dbd-mysql
|
|
|
|
perl-dbd-sqlite
|
|
|
|
perl-dbfile
|
|
|
|
perl-dbi
|
|
|
|
perl-devel-cycle
|
|
|
|
perl-devel-globaldestruction
|
|
|
|
perl-devel-overloadinfo
|
|
|
|
perl-devel-stacktrace
|
|
|
|
perl-digest-md5
|
|
|
|
perl-dist-checkconflicts
|
|
|
|
perl-encode-locale
|
|
|
|
perl-eval-closure
|
|
|
|
perl-exception-class
|
|
|
|
perl-exporter-tiny
|
|
|
|
perl-extutils-config
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-extutils-depends
|
|
|
|
perl-extutils-helpers
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-extutils-installpaths
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-extutils-makemaker
|
|
|
|
perl-extutils-pkgconfig
|
|
|
|
perl-file-copy-recursive
|
|
|
|
perl-file-listing
|
|
|
|
perl-file-pushd
|
|
|
|
perl-file-sharedir-install
|
|
|
|
perl-file-slurp-tiny
|
|
|
|
perl-file-slurper
|
|
|
|
perl-file-which
|
|
|
|
perl-font-ttf
|
|
|
|
perl-gd
|
|
|
|
perl-gd-graph
|
|
|
|
perl-gd-text
|
|
|
|
perl-gdgraph-histogram
|
|
|
|
perl-graph
|
|
|
|
perl-graph-readwrite
|
|
|
|
perl-html-parser
|
|
|
|
perl-html-tagset
|
|
|
|
perl-http-cookies
|
|
|
|
perl-http-daemon
|
|
|
|
perl-http-date
|
|
|
|
perl-http-message
|
|
|
|
perl-http-negotiate
|
|
|
|
perl-inline
|
|
|
|
perl-inline-c
|
|
|
|
perl-intervaltree
|
|
|
|
perl-io-compress
|
|
|
|
perl-io-html
|
|
|
|
perl-io-sessiondata
|
|
|
|
perl-io-socket-ssl
|
|
|
|
perl-io-string
|
|
|
|
perl-json
|
|
|
|
perl-libwww-perl
|
|
|
|
perl-list-moreutils
|
|
|
|
perl-log-log4perl
|
|
|
|
perl-lwp
|
|
|
|
perl-lwp-mediatypes
|
|
|
|
perl-lwp-protocol-https
|
|
|
|
perl-math-bezier
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-math-cdf
|
|
|
|
perl-math-cephes
|
|
|
|
perl-math-matrixreal
|
|
|
|
perl-math-round
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-math-vecstat
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-module-build
|
|
|
|
perl-module-build-tiny
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-module-implementation
|
|
|
|
perl-module-runtime
|
|
|
|
perl-module-runtime-conflicts
|
|
|
|
perl-moose
|
|
|
|
perl-mozilla-ca
|
|
|
|
perl-mro-compat
|
|
|
|
perl-namespace-clean
|
|
|
|
perl-net-http
|
|
|
|
perl-net-scp-expect
|
|
|
|
perl-net-ssleay
|
perl-net-ssleay: fix build (#9783)
|
2018-11-13 11:30:04 -06:00 |
|
perl-number-format
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-package-deprecationmanager
|
|
|
|
perl-package-stash
|
|
|
|
perl-package-stash-xs
|
|
|
|
perl-padwalker
|
|
|
|
perl-parallel-forkmanager
|
|
|
|
perl-params-util
|
|
|
|
perl-params-validate
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-parse-recdescent
|
|
|
|
perl-pdf-api2
|
|
|
|
perl-pegex
|
|
|
|
perl-perl4-corelibs
|
|
|
|
perl-perl6-slurp
|
|
|
|
perl-perlio-gzip
|
|
|
|
perl-perlio-utf8-strict
|
|
|
|
perl-readonly
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-regexp-common
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-scalar-list-utils
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-scalar-util-numeric
|
|
|
|
perl-set-intspan
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-soap-lite
|
|
|
|
perl-star-fusion
|
|
|
|
perl-statistics-basic
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-statistics-descriptive
|
|
|
|
perl-statistics-pca
|
|
|
|
perl-sub-exporter
|
|
|
|
perl-sub-exporter-progressive
|
|
|
|
perl-sub-identify
|
|
|
|
perl-sub-install
|
|
|
|
perl-sub-name
|
|
|
|
perl-sub-uplevel
|
|
|
|
perl-svg
|
|
|
|
perl-swissknife
|
|
|
|
perl-task-weaken
|
|
|
|
perl-term-readkey
|
|
|
|
perl-test-cleannamespaces
|
|
|
|
perl-test-deep
|
|
|
|
perl-test-differences
|
|
|
|
perl-test-exception
|
|
|
|
perl-test-fatal
|
|
|
|
perl-test-memory-cycle
|
|
|
|
perl-test-most
|
|
|
|
perl-test-needs
|
|
|
|
perl-test-requires
|
|
|
|
perl-test-requiresinternet
|
|
|
|
perl-test-warn
|
|
|
|
perl-test-warnings
|
|
|
|
perl-text-csv
|
|
|
|
perl-text-diff
|
|
|
|
perl-text-format
|
added several new perl modules (#9760)
|
2018-11-19 20:44:44 -06:00 |
|
perl-text-simpletable
|
|
|
|
perl-text-soundex
|
|
|
|
perl-text-unidecode
|
|
|
|
perl-time-hires
|
|
|
|
perl-time-piece
|
|
|
|
perl-try-tiny
|
|
|
|
perl-uri
|
|
|
|
perl-uri-escape
|
|
|
|
perl-version
|
|
|
|
perl-want
|
|
|
|
perl-www-robotrules
|
|
|
|
perl-xml-parser
|
|
|
|
perl-xml-parser-lite
|
|
|
|
perl-xml-simple
|
|
|
|
perl-yaml-libyaml
|
|
|
|
petsc
|
petsc-3.10.3: syncs with superlu-dist-6.1. (#10166)
|
2018-12-22 10:40:08 -06:00 |
|
pexsi
|
|
|
|
pfft
|
|
|
|
pflotran
|
xsdk-0.4.0: add/update package versions: (#10038)
|
2018-12-23 17:35:03 -08:00 |
|
pfunit
|
pfunit: add mpi-test patch (#9387)
|
2018-12-05 06:15:16 -07:00 |
|
pgdspider
|
|
|
|
pgi
|
pgi: Add checksum for PGI 18.10 (#9985)
|
2018-12-04 13:12:20 +01:00 |
|
pgmath
|
pgmath: depend on awk (#10200)
|
2018-12-26 13:46:52 -07:00 |
|
phantompeakqualtools
|
|
|
|
phast
|
|
|
|
phasta
|
|
|
|
phist
|
packages/phist: add maintainer (#10162)
|
2018-12-20 13:23:35 +01:00 |
|
phylip
|
|
|
|
phyluce
|
new package: phyluce (starting at 1.6.7) (#9633)
|
2018-10-26 19:33:32 -07:00 |
|
picard
|
|
|
|
picsar
|
|
|
|
picsarlite
|
|
|
|
pidx
|
|
|
|
pigz
|
|
|
|
pilon
|
|
|
|
pindel
|
|
|
|
piranha
|
|
|
|
pism
|
|
|
|
pixman
|
|
|
|
pkg-config
|
|
|
|
pkgconf
|
Fix pkgconf downloads (#10202)
|
2018-12-26 13:46:30 -07:00 |
|
planck-likelihood
|
|
|
|
plasma
|
Add PLASMA version 18.11.0 and Lua variant (#9689)
|
2018-11-28 16:59:05 -06:00 |
|
platypus
|
|
|
|
plink
|
|
|
|
plplot
|
|
|
|
plumed
|
plumed: libmatheval support (#9586)
|
2018-10-19 18:18:56 -07:00 |
|
pmgr-collective
|
|
|
|
pmix
|
PMIX: replace md5 hash with sha256 for recent versions (#9585)
|
2018-10-19 18:28:19 -07:00 |
|
pnfft
|
|
|
|
pngwriter
|
|
|
|
pnmpi
|
|
|
|
poamsa
|
|
|
|
pocl
|
|
|
|
polymake
|
|
|
|
poppler
|
Add latest version of poppler (#10101)
|
2018-12-14 10:47:07 -06:00 |
|
poppler-data
|
|
|
|
porta
|
|
|
|
portage
|
|
|
|
portcullis
|
|
|
|
postgresql
|
|
|
|
ppl
|
|
|
|
pplacer
|
|
|
|
prank
|
|
|
|
precice
|
|
|
|
presentproto
|
|
|
|
preseq
|
|
|
|
price
|
|
|
|
primer3
|
|
|
|
prinseq-lite
|
|
|
|
printproto
|
|
|
|
prng
|
|
|
|
probconsrna
|
|
|
|
prodigal
|
|
|
|
proj
|
|
|
|
protobuf
|
Updated protobuf and py-protobuf to version 3.6.1 (#9536)
|
2018-11-15 16:59:04 +01:00 |
|
proxymngr
|
|
|
|
pruners-ninja
|
|
|
|
ps-lite
|
|
|
|
psi4
|
|
|
|
pslib
|
|
|
|
psm
|
|
|
|
psmc
|
|
|
|
pstreams
|
|
|
|
pugixml
|
|
|
|
pumi
|
pumi: shared variant (#10057)
|
2018-12-08 01:08:58 -06:00 |
|
pv
|
|
|
|
pvm
|
|
|
|
pxz
|
|
|
|
py-3to2
|
|
|
|
py-4suite-xml
|
|
|
|
py-abipy
|
|
|
|
py-adios
|
|
|
|
py-affine
|
|
|
|
py-alabaster
|
|
|
|
py-apache-libcloud
|
|
|
|
py-apipkg
|
|
|
|
py-appdirs
|
|
|
|
py-appnope
|
|
|
|
py-apscheduler
|
|
|
|
py-argcomplete
|
|
|
|
py-argparse
|
|
|
|
py-ase
|
|
|
|
py-asn1crypto
|
|
|
|
py-astroid
|
|
|
|
py-astropy
|
|
|
|
py-atomicwrites
|
|
|
|
py-attrs
|
|
|
|
py-autopep8
|
|
|
|
py-avro
|
|
|
|
py-avro-json-serializer
|
|
|
|
py-babel
|
|
|
|
py-backcall
|
|
|
|
py-backports-abc
|
|
|
|
py-backports-functools-lru-cache
|
py-backports-functools-lru-cache: add to 'backports' namespace (#9720)
|
2018-11-05 16:01:03 -08:00 |
|
py-backports-shutil-get-terminal-size
|
|
|
|
py-backports-ssl-match-hostname
|
|
|
|
py-basemap
|
|
|
|
py-bcbio-gff
|
|
|
|
py-beautifulsoup4
|
|
|
|
py-binwalk
|
|
|
|
py-biom-format
|
|
|
|
py-biopython
|
|
|
|
py-bitarray
|
|
|
|
py-bitstring
|
|
|
|
py-bleach
|
|
|
|
py-blessings
|
|
|
|
py-bokeh
|
|
|
|
py-boltons
|
|
|
|
py-bottleneck
|
|
|
|
py-breakseq2
|
|
|
|
py-breathe
|
Feature add breathe and m2r (#10180)
|
2018-12-23 13:39:21 -06:00 |
|
py-brian
|
|
|
|
py-brian2
|
|
|
|
py-bsddb3
|
|
|
|
py-bx-python
|
|
|
|
py-cartopy
|
|
|
|
py-cclib
|
|
|
|
py-cdat-lite
|
|
|
|
py-cdo
|
|
|
|
py-certifi
|
|
|
|
py-cffi
|
py-cffi: add missing pkgconfig dependency (#9784)
|
2018-11-15 19:38:52 +01:00 |
|
py-cftime
|
py-cftime: new package (#10066)
|
2018-12-23 14:56:08 -06:00 |
|
py-chardet
|
|
|
|
py-checkm-genome
|
|
|
|
py-cheetah
|
|
|
|
py-click
|
|
|
|
py-click-plugins
|
py-geopandas: New package. (#9919)
|
2018-11-24 15:44:44 -06:00 |
|
py-cligj
|
|
|
|
py-cloudpickle
|
|
|
|
py-cogent
|
|
|
|
py-colorama
|
|
|
|
py-colormath
|
|
|
|
py-configparser
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-counter
|
|
|
|
py-coverage
|
|
|
|
py-cpuinfo
|
|
|
|
py-crispresso
|
|
|
|
py-cryptography
|
py-cryptography: add 2.3.1 (#9785)
|
2018-11-15 18:27:29 +01:00 |
|
py-csvkit
|
|
|
|
py-current
|
|
|
|
py-cutadapt
|
|
|
|
py-cvxopt
|
|
|
|
py-cycler
|
|
|
|
py-cython
|
py-cython: add new versions (#9846)
|
2018-11-16 13:20:34 -08:00 |
|
py-dask
|
|
|
|
py-dateutil
|
|
|
|
py-dbf
|
|
|
|
py-decorator
|
|
|
|
py-deeptools
|
|
|
|
py-dendropy
|
|
|
|
py-descartes
|
py-geopandas: New package. (#9919)
|
2018-11-24 15:44:44 -06:00 |
|
py-dill
|
|
|
|
py-discover
|
|
|
|
py-dlcpar
|
|
|
|
py-docopt
|
|
|
|
py-docutils
|
|
|
|
py-doxypy
|
|
|
|
py-doxypypy
|
|
|
|
py-dryscrape
|
|
|
|
py-dxchange
|
|
|
|
py-dxfile
|
|
|
|
py-easybuild-easyblocks
|
|
|
|
py-easybuild-easyconfigs
|
|
|
|
py-easybuild-framework
|
|
|
|
py-edffile
|
|
|
|
py-editdistance
|
|
|
|
py-elasticsearch
|
|
|
|
py-elephant
|
|
|
|
py-emcee
|
|
|
|
py-entrypoints
|
|
|
|
py-enum34
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-epydoc
|
|
|
|
py-espresso
|
|
|
|
py-espressopp
|
|
|
|
py-et-xmlfile
|
|
|
|
py-eventlet
|
|
|
|
py-execnet
|
|
|
|
py-fastaindex
|
|
|
|
py-fasteners
|
|
|
|
py-faststructure
|
|
|
|
py-filelock
|
|
|
|
py-fiona
|
py-geopandas: New package. (#9919)
|
2018-11-24 15:44:44 -06:00 |
|
py-fiscalyear
|
|
|
|
py-flake8
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-flake8-polyfill
|
|
|
|
py-flask
|
|
|
|
py-flask-compress
|
|
|
|
py-flask-socketio
|
|
|
|
py-flexx
|
|
|
|
py-fn
|
|
|
|
py-fparser
|
|
|
|
py-funcsigs
|
|
|
|
py-functools32
|
|
|
|
py-future
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-futures
|
|
|
|
py-fypp
|
pyfypp: add setuptools build dependency (#9650)
|
2018-10-26 19:41:10 -07:00 |
|
py-gdbgui
|
|
|
|
py-genders
|
|
|
|
py-genshi
|
|
|
|
py-geopandas
|
Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962)
|
2018-11-27 16:31:30 -06:00 |
|
py-gevent
|
|
|
|
py-git2
|
|
|
|
py-git-review
|
|
|
|
py-gnuplot
|
|
|
|
py-goatools
|
|
|
|
py-gpaw
|
|
|
|
py-greenlet
|
|
|
|
py-griddataformats
|
|
|
|
py-guidata
|
|
|
|
py-guiqwt
|
|
|
|
py-h5glance
|
new package: PyH5glance (#9700)
|
2018-11-12 18:55:49 -06:00 |
|
py-h5py
|
update h5py to 2.9.0 (#10169)
|
2018-12-20 17:23:17 -06:00 |
|
py-hdfs
|
|
|
|
py-hepdata-validator
|
|
|
|
py-html2text
|
|
|
|
py-html5lib
|
|
|
|
py-htseq
|
|
|
|
py-httpbin
|
|
|
|
py-hypothesis
|
|
|
|
py-idna
|
|
|
|
py-igraph
|
|
|
|
py-illumina-utils
|
|
|
|
py-imageio
|
|
|
|
py-imagesize
|
|
|
|
py-iminuit
|
|
|
|
py-importlib
|
|
|
|
py-ipaddress
|
|
|
|
py-ipdb
|
|
|
|
py-ipykernel
|
|
|
|
py-ipython
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-ipython-genutils
|
|
|
|
py-ipywidgets
|
|
|
|
py-isort
|
|
|
|
py-itsdangerous
|
|
|
|
py-jdcal
|
|
|
|
py-jedi
|
|
|
|
py-jinja2
|
|
|
|
py-joblib
|
|
|
|
py-jprops
|
|
|
|
py-jpype
|
|
|
|
py-jsonschema
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-junit-xml
|
|
|
|
py-jupyter-client
|
|
|
|
py-jupyter-console
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-jupyter-core
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-jupyter-notebook
|
|
|
|
py-keras
|
|
|
|
py-kiwisolver
|
|
|
|
py-lark-parser
|
|
|
|
py-latexcodec
|
|
|
|
py-lazy
|
|
|
|
py-lazy-object-proxy
|
|
|
|
py-lazy-property
|
|
|
|
py-lazyarray
|
|
|
|
py-libconf
|
|
|
|
py-libensemble
|
|
|
|
py-line-profiler
|
|
|
|
py-linecache2
|
|
|
|
py-lit
|
|
|
|
py-llvmlite
|
py-numba: update dependencies and versions (#9706)
|
2018-11-12 23:07:40 -06:00 |
|
py-lmfit
|
|
|
|
py-localcider
|
|
|
|
py-locket
|
|
|
|
py-lockfile
|
|
|
|
py-logilab-common
|
|
|
|
py-lrudict
|
|
|
|
py-lxml
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-lzstring
|
|
|
|
py-m2r
|
Feature add breathe and m2r (#10180)
|
2018-12-23 13:39:21 -06:00 |
|
py-macholib
|
|
|
|
py-machotools
|
|
|
|
py-macs2
|
|
|
|
py-maestrowf
|
|
|
|
py-mako
|
|
|
|
py-mappy
|
|
|
|
py-markdown
|
|
|
|
py-markupsafe
|
|
|
|
py-matplotlib
|
|
|
|
py-mccabe
|
|
|
|
py-mdanalysis
|
|
|
|
py-meep
|
|
|
|
py-memory-profiler
|
|
|
|
py-merlin
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
py-methylcode
|
|
|
|
py-mg-rast-tools
|
|
|
|
py-misopy
|
|
|
|
py-mistune
|
|
|
|
py-mock
|
|
|
|
py-moltemplate
|
|
|
|
py-mongo
|
|
|
|
py-monotonic
|
|
|
|
py-monty
|
|
|
|
py-more-itertools
|
|
|
|
py-mpi4py
|
|
|
|
py-mpmath
|
|
|
|
py-multiprocess
|
|
|
|
py-multiqc
|
|
|
|
py-munch
|
py-geopandas: New package. (#9919)
|
2018-11-24 15:44:44 -06:00 |
|
py-mx
|
|
|
|
py-mxnet
|
|
|
|
py-myhdl
|
|
|
|
py-mysqldb1
|
|
|
|
py-natsort
|
|
|
|
py-nbconvert
|
|
|
|
py-nbformat
|
|
|
|
py-neo
|
|
|
|
py-nestle
|
|
|
|
py-netcdf4
|
|
|
|
py-netifaces
|
|
|
|
py-networkx
|
|
|
|
py-nose
|
|
|
|
py-nosexcover
|
|
|
|
py-numba
|
py-numba: fix py-llvmlite version (#10175)
|
2018-12-21 11:34:32 -06:00 |
|
py-numexpr
|
|
|
|
py-numexpr3
|
|
|
|
py-numpy
|
|
|
|
py-numpydoc
|
|
|
|
py-olefile
|
|
|
|
py-ont-fast5-api
|
|
|
|
py-openpmd-validator
|
|
|
|
py-openpyxl
|
|
|
|
py-openslide-python
|
|
|
|
py-opentuner
|
|
|
|
py-ordereddict
|
|
|
|
py-oset
|
|
|
|
py-owslib
|
Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962)
|
2018-11-27 16:31:30 -06:00 |
|
py-packaging
|
|
|
|
py-palettable
|
|
|
|
py-pandas
|
|
|
|
py-paramiko
|
|
|
|
py-partd
|
|
|
|
py-pathlib2
|
|
|
|
py-pathos
|
|
|
|
py-pathspec
|
|
|
|
py-patsy
|
|
|
|
py-pbr
|
|
|
|
py-pep8-naming
|
|
|
|
py-perf
|
|
|
|
py-performance
|
|
|
|
py-periodictable
|
|
|
|
py-petsc4py
|
|
|
|
py-pexpect
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-phonopy
|
|
|
|
py-pickleshare
|
|
|
|
py-picrust
|
|
|
|
py-pil
|
|
|
|
py-pillow
|
|
|
|
py-pint
|
Provide a new spackage for py-pint. (#9991)
|
2018-12-04 08:58:11 -06:00 |
|
py-pip
|
new version 18.1 for py-pip (#9938)
|
2018-11-23 18:09:20 -06:00 |
|
py-pipits
|
|
|
|
py-pkgconfig
|
|
|
|
py-plotly
|
|
|
|
py-pluggy
|
|
|
|
py-ply
|
py-ply: fix download url (#9862)
|
2018-11-16 13:12:05 -08:00 |
|
py-pmw
|
|
|
|
py-poster
|
|
|
|
py-pox
|
|
|
|
py-ppft
|
|
|
|
py-prettytable
|
|
|
|
py-progress
|
|
|
|
py-projectq
|
|
|
|
py-prompt-toolkit
|
|
|
|
py-protobuf
|
Updated protobuf and py-protobuf to version 3.6.1 (#9536)
|
2018-11-15 16:59:04 +01:00 |
|
py-psutil
|
|
|
|
py-psyclone
|
|
|
|
py-psycopg2
|
py-psycopg2: new package (#9926)
|
2018-11-24 17:45:16 -06:00 |
|
py-ptyprocess
|
|
|
|
py-pudb
|
|
|
|
py-py
|
|
|
|
py-py2bit
|
|
|
|
py-py2cairo
|
|
|
|
py-py2neo
|
|
|
|
py-py4j
|
|
|
|
py-pyani
|
|
|
|
py-pyarrow
|
Fix pkg-config dependencies (#9738)
|
2018-11-13 00:01:41 -06:00 |
|
py-pyasn1
|
|
|
|
py-pybigwig
|
|
|
|
py-pybind11
|
|
|
|
py-pybtex
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-pybtex-docutils
|
|
|
|
py-pycairo
|
|
|
|
py-pychecker
|
|
|
|
py-pycodestyle
|
|
|
|
py-pycparser
|
|
|
|
py-pycrypto
|
|
|
|
py-pycurl
|
|
|
|
py-pydatalog
|
|
|
|
py-pydispatcher
|
|
|
|
py-pydot
|
|
|
|
py-pyelftools
|
|
|
|
py-pyepsg
|
|
|
|
py-pyfasta
|
|
|
|
py-pyfftw
|
|
|
|
py-pyflakes
|
|
|
|
py-pygdbmi
|
|
|
|
py-pygments
|
|
|
|
py-pygobject
|
py-pygobject: add missing pkgconfig dependency (#9955)
|
2018-11-26 21:41:44 -06:00 |
|
py-pygpu
|
|
|
|
py-pygresql
|
py-pygresql: new package (#9922)
|
2018-11-24 17:45:27 -06:00 |
|
py-pygtk
|
|
|
|
py-pylint
|
|
|
|
py-pymatgen
|
|
|
|
py-pyminifier
|
|
|
|
py-pymol
|
|
|
|
py-pympler
|
|
|
|
py-pymysql
|
|
|
|
py-pynio
|
py-pynio: new package (#10074)
|
2018-12-23 09:50:41 -06:00 |
|
py-pynn
|
|
|
|
py-pypar
|
|
|
|
py-pyparsing
|
|
|
|
py-pypeflow
|
|
|
|
py-pyprof2html
|
|
|
|
py-pyproj
|
Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962)
|
2018-11-27 16:31:30 -06:00 |
|
py-pyqi
|
|
|
|
py-pyqt
|
|
|
|
py-pyrad
|
|
|
|
py-pysam
|
|
|
|
py-pyscaf
|
|
|
|
py-pyserial
|
|
|
|
py-pyshp
|
|
|
|
py-pyside
|
|
|
|
py-pysocks
|
|
|
|
py-pyspark
|
|
|
|
py-pysqlite
|
|
|
|
py-pytables
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-pytest
|
|
|
|
py-pytest-cov
|
|
|
|
py-pytest-flake8
|
|
|
|
py-pytest-httpbin
|
|
|
|
py-pytest-mock
|
|
|
|
py-pytest-runner
|
|
|
|
py-pytest-xdist
|
|
|
|
py-pythia
|
Add GMT, CitcomS, and fstrack packages (#9768)
|
2018-11-14 23:30:44 -06:00 |
|
py-python-daemon
|
|
|
|
py-python-engineio
|
|
|
|
py-python-gitlab
|
|
|
|
py-python-htmlgen
|
new package: python htmlgen (#9699)
|
2018-11-12 18:47:04 -06:00 |
|
py-python-levenshtein
|
|
|
|
py-python-socketio
|
|
|
|
py-pythonqwt
|
|
|
|
py-pytorch
|
Add PyTorch 1.0 (#10193)
|
2018-12-24 17:27:01 -06:00 |
|
py-pytz
|
|
|
|
py-pyutilib
|
|
|
|
py-pywavelets
|
|
|
|
py-pyyaml
|
|
|
|
py-qtawesome
|
|
|
|
py-qtconsole
|
|
|
|
py-qtpy
|
|
|
|
py-quantities
|
|
|
|
py-quast
|
|
|
|
py-radical-utils
|
|
|
|
py-ranger
|
|
|
|
py-rasterio
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-readme-renderer
|
|
|
|
py-regex
|
|
|
|
py-reportlab
|
|
|
|
py-requests
|
|
|
|
py-requests-toolbelt
|
|
|
|
py-restview
|
|
|
|
py-rope
|
Adding patch to remove unicode character from pyrope readme file (#9988)
|
2018-12-06 11:11:23 +01:00 |
|
py-rpy2
|
|
|
|
py-rsa
|
|
|
|
py-rseqc
|
|
|
|
py-rtree
|
|
|
|
py-saga-python
|
|
|
|
py-scandir
|
|
|
|
py-scientificpython
|
|
|
|
py-scikit-image
|
|
|
|
py-scikit-learn
|
Package/py scikit learn (#9843)
|
2018-11-24 19:03:30 -06:00 |
|
py-scipy
|
|
|
|
py-seaborn
|
|
|
|
py-setuptools
|
|
|
|
py-setuptools-git
|
|
|
|
py-setuptools-scm
|
|
|
|
py-sfepy
|
|
|
|
py-sh
|
|
|
|
py-shapely
|
|
|
|
py-shiboken
|
|
|
|
py-simplegeneric
|
|
|
|
py-simplejson
|
|
|
|
py-singledispatch
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-sip
|
|
|
|
py-six
|
|
|
|
py-slepc4py
|
|
|
|
py-slurm-pipeline
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-sncosmo
|
|
|
|
py-snowballstemmer
|
|
|
|
py-snuggs
|
|
|
|
py-spectra
|
|
|
|
py-spefile
|
|
|
|
py-spglib
|
|
|
|
py-sphinx
|
Feature add breathe and m2r (#10180)
|
2018-12-23 13:39:21 -06:00 |
|
py-sphinx-bootstrap-theme
|
|
|
|
py-sphinx-rtd-theme
|
|
|
|
py-sphinxcontrib-bibtex
|
|
|
|
py-sphinxcontrib-programoutput
|
|
|
|
py-sphinxcontrib-websupport
|
|
|
|
py-spyder
|
|
|
|
py-spykeutils
|
|
|
|
py-sqlalchemy
|
|
|
|
py-statsmodels
|
|
|
|
py-stevedore
|
|
|
|
py-storm
|
|
|
|
py-subprocess32
|
|
|
|
py-symengine
|
|
|
|
py-symfit
|
|
|
|
py-sympy
|
|
|
|
py-tabulate
|
|
|
|
py-tappy
|
|
|
|
py-terminado
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-testinfra
|
py-testinfra: Add version 1.18.0 (#10210)
|
2018-12-28 18:24:58 +01:00 |
|
py-tetoolkit
|
|
|
|
py-theano
|
|
|
|
py-tifffile
|
|
|
|
py-toml
|
|
|
|
py-tomopy
|
|
|
|
py-toolz
|
|
|
|
py-tornado
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-tqdm
|
|
|
|
py-traceback2
|
|
|
|
py-traitlets
|
Uncomment dependencies previously disallowed by concretizer (#9942)
|
2018-11-26 09:11:16 +01:00 |
|
py-tuiview
|
|
|
|
py-twisted
|
|
|
|
py-typing
|
|
|
|
py-tzlocal
|
|
|
|
py-udunits
|
|
|
|
py-umi-tools
|
|
|
|
py-unittest2
|
|
|
|
py-unittest2py3k
|
|
|
|
py-urllib3
|
|
|
|
py-urwid
|
|
|
|
py-vcversioner
|
|
|
|
py-virtualenv
|
|
|
|
py-virtualenv-clone
|
|
|
|
py-virtualenvwrapper
|
|
|
|
py-vsc-base
|
|
|
|
py-vsc-install
|
|
|
|
py-wcsaxes
|
|
|
|
py-wcwidth
|
|
|
|
py-webkit-server
|
|
|
|
py-weblogo
|
|
|
|
py-werkzeug
|
|
|
|
py-wheel
|
|
|
|
py-widgetsnbextension
|
|
|
|
py-wrapt
|
|
|
|
py-xarray
|
|
|
|
py-xattr
|
|
|
|
py-xdot
|
added stat version 4.0.1 (#9607)
|
2018-10-22 18:59:44 -07:00 |
|
py-xlrd
|
|
|
|
py-xlsxwriter
|
|
|
|
py-xmlrunner
|
|
|
|
py-xopen
|
|
|
|
py-xpyb
|
|
|
|
py-xvfbwrapper
|
|
|
|
py-yamlreader
|
|
|
|
py-yapf
|
|
|
|
py-yt
|
|
|
|
py-ytopt
|
|
|
|
py-zmq
|
New versions for a few python modules (#9969)
|
2018-11-28 21:44:15 -06:00 |
|
py-zope-event
|
|
|
|
py-zope-interface
|
|
|
|
pythia6
|
|
|
|
python
|
|
|
|
qbank
|
|
|
|
qbox
|
|
|
|
qca
|
qca: new package (#9924)
|
2018-11-22 12:45:42 -06:00 |
|
qhull
|
|
|
|
qjson
|
qjson: new package (#9925)
|
2018-11-22 12:45:17 -06:00 |
|
qmcpack
|
|
|
|
qmd-progress
|
|
|
|
qorts
|
|
|
|
qrupdate
|
|
|
|
qt
|
qt: fix openssl dependency for older versions (#10106)
|
2018-12-14 11:11:31 -06:00 |
|
qt-creator
|
|
|
|
qtgraph
|
|
|
|
qthreads
|
|
|
|
quantum-espresso
|
Quantum ESPRESSO update - Nov 2018 (#9853)
|
2018-12-06 10:57:52 +01:00 |
|
quinoa
|
|
|
|
qwt
|
|
|
|
r
|
|
|
|
r3d
|
R3D spackage (#10164)
|
2018-12-20 17:23:38 -06:00 |
|
r-a4
|
|
|
|
r-a4base
|
|
|
|
r-a4classif
|
|
|
|
r-a4core
|
|
|
|
r-a4preproc
|
|
|
|
r-a4reporting
|
|
|
|
r-abadata
|
|
|
|
r-abaenrichment
|
|
|
|
r-abind
|
|
|
|
r-absseq
|
|
|
|
r-acde
|
|
|
|
r-acepack
|
|
|
|
r-acgh
|
|
|
|
r-acme
|
|
|
|
r-ada
|
|
|
|
r-adabag
|
|
|
|
r-ade4
|
|
|
|
r-adegenet
|
|
|
|
r-adsplit
|
|
|
|
r-aer
|
|
|
|
r-affxparser
|
|
|
|
r-affy
|
|
|
|
r-affycomp
|
|
|
|
r-affycompatible
|
|
|
|
r-affycontam
|
|
|
|
r-affycoretools
|
|
|
|
r-affydata
|
|
|
|
r-affyexpress
|
|
|
|
r-affyilm
|
|
|
|
r-affyio
|
|
|
|
r-affypdnn
|
|
|
|
r-affyplm
|
|
|
|
r-affyqcreport
|
|
|
|
r-affyrnadegradation
|
|
|
|
r-agdex
|
|
|
|
r-agilp
|
|
|
|
r-agimicrorna
|
|
|
|
r-aims
|
|
|
|
r-aldex2
|
|
|
|
r-allelicimbalance
|
|
|
|
r-alpine
|
|
|
|
r-als
|
|
|
|
r-alsace
|
|
|
|
r-altcdfenvs
|
|
|
|
r-amap
|
|
|
|
r-ampliqueso
|
|
|
|
r-analysispageserver
|
|
|
|
r-anaquin
|
|
|
|
r-aneufinder
|
|
|
|
r-aneufinderdata
|
|
|
|
r-animation
|
|
|
|
r-annaffy
|
|
|
|
r-annotate
|
|
|
|
r-annotationdbi
|
|
|
|
r-annotationfilter
|
|
|
|
r-annotationforge
|
|
|
|
r-annotationhub
|
|
|
|
r-ape
|
|
|
|
r-argparse
|
r-argparse: remove unnecessary r-getopt version (#9638)
|
2018-10-25 17:55:22 -07:00 |
|
r-assertthat
|
|
|
|
r-backports
|
|
|
|
r-bamsignals
|
|
|
|
r-base64
|
|
|
|
r-base64enc
|
|
|
|
r-bayesm
|
r-compositions: new package, including its dependencies (#9921)
|
2018-11-23 18:06:57 -06:00 |
|
r-bbmisc
|
|
|
|
r-beanplot
|
|
|
|
r-bh
|
|
|
|
r-biasedurn
|
|
|
|
r-bindr
|
added r-bindr v 0.1.1 (#9717)
|
2018-11-13 10:58:31 -06:00 |
|
r-bindrcpp
|
|
|
|
r-biobase
|
|
|
|
r-biocgenerics
|
|
|
|
r-biocinstaller
|
|
|
|
r-biocparallel
|
|
|
|
r-biocstyle
|
|
|
|
r-biom-utils
|
|
|
|
r-biomart
|
|
|
|
r-biomformat
|
|
|
|
r-biostrings
|
|
|
|
r-biovizbase
|
|
|
|
r-bit
|
|
|
|
r-bit64
|
|
|
|
r-bitops
|
|
|
|
r-blob
|
|
|
|
r-blockmodeling
|
r-blockmodeling: new package at 0.3.1 (#10044)
|
2018-12-07 11:24:43 -06:00 |
|
r-bookdown
|
|
|
|
r-boot
|
|
|
|
r-brew
|
|
|
|
r-broom
|
|
|
|
r-bsgenome
|
|
|
|
r-bumphunter
|
|
|
|
r-c50
|
|
|
|
r-cairo
|
r-cairo: new package (#9794)
|
2018-11-14 21:44:55 -06:00 |
|
r-callr
|
r-callr: adding new dependencies (#9730)
|
2018-11-12 18:38:03 -06:00 |
|
r-car
|
|
|
|
r-caret
|
|
|
|
r-category
|
|
|
|
r-catools
|
|
|
|
r-cdcfluview
|
|
|
|
r-cellranger
|
|
|
|
r-checkmate
|
|
|
|
r-checkpoint
|
|
|
|
r-chemometrics
|
|
|
|
r-chron
|
|
|
|
r-circlize
|
|
|
|
r-class
|
|
|
|
r-classint
|
|
|
|
r-cli
|
|
|
|
r-clipr
|
|
|
|
r-cluster
|
|
|
|
r-clustergeneration
|
r-clustergeneration: new package at 1.3.4 (#9765)
|
2018-11-12 18:34:03 -06:00 |
|
r-clusterprofiler
|
|
|
|
r-cner
|
|
|
|
r-coda
|
|
|
|
r-codetools
|
|
|
|
r-coin
|
|
|
|
r-colorspace
|
|
|
|
r-combinat
|
r-combinat: new package at 0.0-8 (#9764)
|
2018-11-13 10:41:54 -06:00 |
|
r-complexheatmap
|
|
|
|
r-compositions
|
r-compositions: new package, including its dependencies (#9921)
|
2018-11-23 18:06:57 -06:00 |
|
r-convevol
|
r-convevol: new package at 1.3 (#9767)
|
2018-11-12 18:36:31 -06:00 |
|
r-corhmm
|
r-corhmm: new package at 1.22 (#9859)
|
2018-12-22 19:09:20 +01:00 |
|
r-corpcor
|
|
|
|
r-corrplot
|
|
|
|
r-covr
|
|
|
|
r-cowplot
|
|
|
|
r-crayon
|
|
|
|
r-crosstalk
|
r-crosstalk: remove unnecessary constraint (#9892)
|
2018-11-19 20:41:41 -06:00 |
|
r-ctc
|
|
|
|
r-cubature
|
|
|
|
r-cubist
|
|
|
|
r-curl
|
|
|
|
r-data-table
|
|
|
|
r-dbi
|
|
|
|
r-dbplyr
|
|
|
|
r-delayedarray
|
r-delayedarray: new dep in latest vers (#9731)
|
2018-11-07 10:27:08 -06:00 |
|
r-deldir
|
|
|
|
r-dendextend
|
|
|
|
r-deoptim
|
|
|
|
r-deoptimr
|
|
|
|
r-deseq
|
|
|
|
r-deseq2
|
|
|
|
r-desolve
|
|
|
|
r-devtools
|
|
|
|
r-diagrammer
|
|
|
|
r-dicekriging
|
|
|
|
r-dichromat
|
|
|
|
r-diffusionmap
|
|
|
|
r-digest
|
|
|
|
r-diptest
|
|
|
|
r-dirichletmultinomial
|
|
|
|
r-dismo
|
r-dismo: new package starting at 1.1-4 (#9675)
|
2018-10-31 11:28:09 +01:00 |
|
r-diversitree
|
r-diversitree: new package (#9893)
|
2018-11-19 20:41:01 -06:00 |
|
r-dnacopy
|
|
|
|
r-do-db
|
|
|
|
r-domc
|
|
|
|
r-doparallel
|
|
|
|
r-dorng
|
|
|
|
r-dose
|
|
|
|
r-downloader
|
|
|
|
r-dplyr
|
|
|
|
r-dt
|
|
|
|
r-dtw
|
|
|
|
r-dygraphs
|
|
|
|
r-e1071
|
|
|
|
r-edger
|
|
|
|
r-ellipse
|
|
|
|
r-energy
|
r-compositions: new package, including its dependencies (#9921)
|
2018-11-23 18:06:57 -06:00 |
|
r-ensembldb
|
|
|
|
r-ergm
|
|
|
|
r-evaluate
|
|
|
|
r-expint
|
r-expint: new package at 0.1-5 (#10043)
|
2018-12-07 18:21:40 -08:00 |
|
r-expm
|
|
|
|
r-factoextra
|
|
|
|
r-factominer
|
|
|
|
r-fastcluster
|
|
|
|
r-fastmatch
|
|
|
|
r-ff
|
|
|
|
r-fftwtools
|
|
|
|
r-fgsea
|
|
|
|
r-filehash
|
|
|
|
r-findpython
|
|
|
|
r-fit-models
|
|
|
|
r-flashclust
|
|
|
|
r-flexclust
|
|
|
|
r-flexmix
|
|
|
|
r-fnn
|
|
|
|
r-forcats
|
|
|
|
r-foreach
|
|
|
|
r-forecast
|
|
|
|
r-foreign
|
|
|
|
r-formatr
|
|
|
|
r-formula
|
|
|
|
r-fpc
|
|
|
|
r-fracdiff
|
|
|
|
r-futile-logger
|
|
|
|
r-futile-options
|
|
|
|
r-gbm
|
|
|
|
r-gcrma
|
|
|
|
r-gdata
|
|
|
|
r-gdsfmt
|
|
|
|
r-geiger
|
|
|
|
r-genefilter
|
|
|
|
r-genelendatabase
|
|
|
|
r-geneplotter
|
|
|
|
r-genie3
|
|
|
|
r-genomeinfodb
|
|
|
|
r-genomeinfodbdata
|
r-genomeinfodbdata: url fix (#9732)
|
2018-11-13 10:57:04 -06:00 |
|
r-genomicalignments
|
|
|
|
r-genomicfeatures
|
|
|
|
r-genomicranges
|
|
|
|
r-gensa
|
new package: r-gensa (starting at 1.1.7) (#9858)
|
2018-11-16 13:13:48 -08:00 |
|
r-geomorph
|
r-geomorph: new version (#9890)
|
2018-11-19 20:41:19 -06:00 |
|
r-geoquery
|
|
|
|
r-geor
|
r-geor: new package, and a couple of its dependencies (#9920)
|
2018-11-24 14:21:54 -06:00 |
|
r-geosphere
|
|
|
|
r-getopt
|
r-optparse: new package (#9967)
|
2018-12-04 13:20:08 +01:00 |
|
r-getoptlong
|
|
|
|
r-ggally
|
|
|
|
r-ggbio
|
|
|
|
r-ggdendro
|
|
|
|
r-ggjoy
|
|
|
|
r-ggmap
|
|
|
|
r-ggplot2
|
|
|
|
r-ggpubr
|
|
|
|
r-ggrepel
|
|
|
|
r-ggridges
|
|
|
|
r-ggsci
|
|
|
|
r-ggvis
|
|
|
|
r-gistr
|
|
|
|
r-git2r
|
|
|
|
r-glimma
|
|
|
|
r-glmnet
|
|
|
|
r-globaloptions
|
|
|
|
r-glue
|
|
|
|
r-gmodels
|
|
|
|
r-gmp
|
|
|
|
r-go-db
|
|
|
|
r-googlevis
|
|
|
|
r-goplot
|
r-goplot: fix r-rcolorbrewer version format (#9631)
|
2018-10-25 17:58:07 -07:00 |
|
r-gosemsim
|
|
|
|
r-goseq
|
|
|
|
r-gostats
|
|
|
|
r-gplots
|
|
|
|
r-graph
|
|
|
|
r-gridbase
|
|
|
|
r-gridextra
|
|
|
|
r-gseabase
|
|
|
|
r-gss
|
|
|
|
r-gsubfn
|
|
|
|
r-gtable
|
|
|
|
r-gtools
|
|
|
|
r-gtrellis
|
|
|
|
r-gviz
|
|
|
|
r-haven
|
|
|
|
r-hexbin
|
|
|
|
r-highr
|
|
|
|
r-hmisc
|
|
|
|
r-hms
|
|
|
|
r-htmltable
|
|
|
|
r-htmltools
|
|
|
|
r-htmlwidgets
|
|
|
|
r-httpuv
|
|
|
|
r-httr
|
|
|
|
r-hwriter
|
|
|
|
r-hypergraph
|
|
|
|
r-ica
|
|
|
|
r-igraph
|
|
|
|
r-illuminaio
|
|
|
|
r-impute
|
|
|
|
r-influencer
|
|
|
|
r-inline
|
|
|
|
r-interactivedisplaybase
|
|
|
|
r-ipred
|
|
|
|
r-iranges
|
|
|
|
r-irdisplay
|
|
|
|
r-irkernel
|
|
|
|
r-irlba
|
|
|
|
r-iso
|
|
|
|
r-iterators
|
|
|
|
r-janitor
|
|
|
|
r-jaspar2018
|
|
|
|
r-jomo
|
|
|
|
r-jpeg
|
|
|
|
r-jsonlite
|
|
|
|
r-kegg-db
|
|
|
|
r-kegggraph
|
|
|
|
r-keggrest
|
|
|
|
r-kernlab
|
|
|
|
r-kernsmooth
|
|
|
|
r-kknn
|
|
|
|
r-knitr
|
|
|
|
r-ks
|
|
|
|
r-labeling
|
|
|
|
r-lambda-r
|
|
|
|
r-laplacesdemon
|
|
|
|
r-lars
|
|
|
|
r-lattice
|
|
|
|
r-latticeextra
|
|
|
|
r-lava
|
|
|
|
r-lazyeval
|
|
|
|
r-leaflet
|
|
|
|
r-leaps
|
|
|
|
r-learnbayes
|
|
|
|
r-lhs
|
|
|
|
r-limma
|
|
|
|
r-lme4
|
|
|
|
r-lmtest
|
|
|
|
r-locfit
|
|
|
|
r-log4r
|
|
|
|
r-lpsolve
|
|
|
|
r-lsei
|
|
|
|
r-lubridate
|
|
|
|
r-magic
|
|
|
|
r-magrittr
|
|
|
|
r-makecdfenv
|
|
|
|
r-maldiquant
|
|
|
|
r-manipulatewidget
|
r-manipulatewidget: new package at 0.10.0 (#9826)
|
2018-11-12 18:41:03 -06:00 |
|
r-mapproj
|
|
|
|
r-maps
|
|
|
|
r-maptools
|
|
|
|
r-markdown
|
|
|
|
r-mass
|
|
|
|
r-matr
|
|
|
|
r-matrix
|
|
|
|
r-matrixmodels
|
|
|
|
r-matrixstats
|
|
|
|
r-mclust
|
|
|
|
r-mcmcglmm
|
|
|
|
r-mco
|
|
|
|
r-mda
|
|
|
|
r-memoise
|
|
|
|
r-mergemaid
|
|
|
|
r-methodss3
|
|
|
|
r-mgcv
|
|
|
|
r-mgraster
|
|
|
|
r-mice
|
|
|
|
r-mime
|
|
|
|
r-minfi
|
|
|
|
r-miniui
|
r-miniui: new package at 0.1.1.1 (#9823)
|
2018-11-12 18:34:56 -06:00 |
|
r-minqa
|
|
|
|
r-misc3d
|
|
|
|
r-mitml
|
|
|
|
r-mixtools
|
|
|
|
r-mlbench
|
|
|
|
r-mlinterfaces
|
|
|
|
r-mlr
|
|
|
|
r-mlrmbo
|
|
|
|
r-mmwrweek
|
|
|
|
r-mnormt
|
|
|
|
r-modelmetrics
|
|
|
|
r-modelr
|
|
|
|
r-modeltools
|
|
|
|
r-mpm
|
|
|
|
r-msnbase
|
|
|
|
r-multcomp
|
|
|
|
r-multicool
|
|
|
|
r-multitaper
|
r-multitaper: new package at 1.0-14 (#10110)
|
2018-12-15 20:08:33 +01:00 |
|
r-multtest
|
|
|
|
r-munsell
|
|
|
|
r-mvtnorm
|
|
|
|
r-mzid
|
|
|
|
r-mzr
|
|
|
|
r-nanotime
|
|
|
|
r-ncbit
|
|
|
|
r-ncdf4
|
|
|
|
r-network
|
|
|
|
r-networkd3
|
|
|
|
r-nlme
|
|
|
|
r-nloptr
|
|
|
|
r-nmf
|
|
|
|
r-nnet
|
|
|
|
r-nnls
|
|
|
|
r-nor1mix
|
|
|
|
r-np
|
|
|
|
r-numderiv
|
|
|
|
r-oligoclasses
|
|
|
|
r-oo
|
|
|
|
r-openssl
|
|
|
|
r-optparse
|
r-optparse: new package (#9967)
|
2018-12-04 13:20:08 +01:00 |
|
r-org-hs-eg-db
|
|
|
|
r-organismdbi
|
|
|
|
r-packrat
|
|
|
|
r-pacman
|
|
|
|
r-paleotree
|
r-paleotree: new package (#9895)
|
2018-11-19 20:39:42 -06:00 |
|
r-pamr
|
|
|
|
r-pan
|
|
|
|
r-parallelmap
|
|
|
|
r-paramhelpers
|
|
|
|
r-party
|
|
|
|
r-partykit
|
|
|
|
r-pathview
|
|
|
|
r-pbapply
|
|
|
|
r-pbdzmq
|
|
|
|
r-pbkrtest
|
|
|
|
r-pcamethods
|
|
|
|
r-pcapp
|
|
|
|
r-permute
|
|
|
|
r-pfam-db
|
|
|
|
r-phangorn
|
|
|
|
r-phantompeakqualtools
|
|
|
|
r-phyloseq
|
|
|
|
r-phytools
|
r-phytools: new package at 0.6-60 (#9766)
|
2018-11-14 21:39:05 -06:00 |
|
r-picante
|
|
|
|
r-pkgconfig
|
|
|
|
r-pkgmaker
|
|
|
|
r-plogr
|
|
|
|
r-plot3d
|
|
|
|
r-plotly
|
|
|
|
r-plotrix
|
|
|
|
r-pls
|
|
|
|
r-plyr
|
|
|
|
r-pmcmr
|
|
|
|
r-png
|
|
|
|
r-popgenome
|
r-popgenome: new package at 2.6.1 (#10108)
|
2018-12-15 08:44:20 -06:00 |
|
r-powerlaw
|
|
|
|
r-prabclus
|
|
|
|
r-praise
|
|
|
|
r-preprocesscore
|
|
|
|
r-prettyunits
|
|
|
|
r-processx
|
|
|
|
r-prodlim
|
|
|
|
r-progress
|
|
|
|
r-protgenerics
|
|
|
|
r-proto
|
|
|
|
r-proxy
|
|
|
|
r-pryr
|
|
|
|
r-ps
|
|
|
|
r-psych
|
|
|
|
r-ptw
|
|
|
|
r-purrr
|
|
|
|
r-quadprog
|
|
|
|
r-quantmod
|
|
|
|
r-quantreg
|
|
|
|
r-quantro
|
|
|
|
r-qvalue
|
|
|
|
r-r6
|
|
|
|
r-randomfields
|
r-geor: new package, and a couple of its dependencies (#9920)
|
2018-11-24 14:21:54 -06:00 |
|
r-randomfieldsutils
|
r-geor: new package, and a couple of its dependencies (#9920)
|
2018-11-24 14:21:54 -06:00 |
|
r-randomforest
|
|
|
|
r-ranger
|
|
|
|
r-rappdirs
|
|
|
|
r-raster
|
|
|
|
r-rbgl
|
|
|
|
r-rbokeh
|
|
|
|
r-rcolorbrewer
|
|
|
|
r-rcpp
|
|
|
|
r-rcpparmadillo
|
|
|
|
r-rcppblaze
|
|
|
|
r-rcppcctz
|
|
|
|
r-rcppcnpy
|
|
|
|
r-rcppeigen
|
|
|
|
r-rcppprogress
|
|
|
|
r-rcurl
|
|
|
|
r-rda
|
|
|
|
r-readr
|
|
|
|
r-readxl
|
|
|
|
r-registry
|
|
|
|
r-rematch
|
|
|
|
r-reordercluster
|
|
|
|
r-reportingtools
|
|
|
|
r-repr
|
|
|
|
r-reprex
|
|
|
|
r-reshape
|
|
|
|
r-reshape2
|
|
|
|
r-rex
|
|
|
|
r-rgdal
|
|
|
|
r-rgenoud
|
|
|
|
r-rgeos
|
|
|
|
r-rgl
|
r-rgl: update url, add new version (#9796)
|
2018-11-16 15:26:09 +01:00 |
|
r-rgooglemaps
|
|
|
|
r-rgraphviz
|
|
|
|
r-rhdf5
|
|
|
|
r-rhtslib
|
|
|
|
r-rinside
|
|
|
|
r-rjags
|
R rjags - new version (#9568)
|
2018-10-29 16:12:20 -05:00 |
|
r-rjava
|
|
|
|
r-rjson
|
|
|
|
r-rjsonio
|
|
|
|
r-rlang
|
|
|
|
r-rmarkdown
|
|
|
|
r-rminer
|
|
|
|
r-rmpfr
|
|
|
|
r-rmpi
|
|
|
|
r-rmysql
|
|
|
|
r-rngtools
|
|
|
|
r-robustbase
|
|
|
|
r-rocr
|
|
|
|
r-rodbc
|
|
|
|
r-rots
|
|
|
|
r-roxygen2
|
|
|
|
r-rpart
|
|
|
|
r-rpart-plot
|
|
|
|
r-rpostgresql
|
|
|
|
r-rprojroot
|
|
|
|
r-rrpp
|
r-rrpp: new package (#9887)
|
2018-11-19 20:42:45 -06:00 |
|
r-rsamtools
|
|
|
|
r-rsnns
|
|
|
|
r-rsolnp
|
|
|
|
r-rsqlite
|
|
|
|
r-rstan
|
|
|
|
r-rstudioapi
|
|
|
|
r-rtracklayer
|
|
|
|
r-rtsne
|
|
|
|
r-rvcheck
|
|
|
|
r-rvest
|
|
|
|
r-rzmq
|
|
|
|
r-s4vectors
|
|
|
|
r-samr
|
|
|
|
r-sandwich
|
|
|
|
r-scales
|
|
|
|
r-scatterplot3d
|
|
|
|
r-sdmtools
|
|
|
|
r-segmented
|
|
|
|
r-selectr
|
|
|
|
r-seqinr
|
|
|
|
r-seqlogo
|
|
|
|
r-seurat
|
|
|
|
r-sf
|
|
|
|
r-sfsmisc
|
|
|
|
r-shape
|
|
|
|
r-shiny
|
|
|
|
r-shinydashboard
|
|
|
|
r-shortread
|
|
|
|
r-siggenes
|
|
|
|
r-simpleaffy
|
|
|
|
r-sm
|
|
|
|
r-smoof
|
|
|
|
r-sn
|
|
|
|
r-snow
|
|
|
|
r-snowfall
|
|
|
|
r-snprelate
|
|
|
|
r-som
|
|
|
|
r-somaticsignatures
|
|
|
|
r-sourcetools
|
|
|
|
r-sp
|
|
|
|
r-sparsem
|
|
|
|
r-spdep
|
|
|
|
r-speedglm
|
|
|
|
r-spem
|
|
|
|
r-splancs
|
r-geor: new package, and a couple of its dependencies (#9920)
|
2018-11-24 14:21:54 -06:00 |
|
r-splitstackshape
|
|
|
|
r-sqldf
|
|
|
|
r-squash
|
|
|
|
r-sseq
|
r-sseq: new package at 1.20.0 (#10042)
|
2018-12-07 11:24:55 -06:00 |
|
r-stanheaders
|
|
|
|
r-statmod
|
|
|
|
r-statnet-common
|
|
|
|
r-stringi
|
|
|
|
r-stringr
|
|
|
|
r-strucchange
|
|
|
|
r-subplex
|
|
|
|
r-summarizedexperiment
|
|
|
|
r-survey
|
|
|
|
r-survival
|
|
|
|
r-sva
|
|
|
|
r-tarifx
|
|
|
|
r-tclust
|
|
|
|
r-tensora
|
|
|
|
r-testit
|
|
|
|
r-testthat
|
|
|
|
r-tfbstools
|
|
|
|
r-tfmpvalue
|
|
|
|
r-th-data
|
|
|
|
r-threejs
|
|
|
|
r-tibble
|
|
|
|
r-tidycensus
|
|
|
|
r-tidyr
|
|
|
|
r-tidyselect
|
|
|
|
r-tidyverse
|
|
|
|
r-tiff
|
|
|
|
r-tigris
|
|
|
|
r-timedate
|
|
|
|
r-tmixclust
|
|
|
|
r-topgo
|
|
|
|
r-trimcluster
|
|
|
|
r-truncnorm
|
|
|
|
r-trust
|
|
|
|
r-tseries
|
|
|
|
r-tsne
|
|
|
|
r-ttr
|
|
|
|
r-udunits2
|
|
|
|
r-units
|
|
|
|
r-utils
|
|
|
|
r-uuid
|
|
|
|
r-variantannotation
|
|
|
|
r-varselrf
|
|
|
|
r-vcd
|
|
|
|
r-vegan
|
|
|
|
r-vgam
|
|
|
|
r-vipor
|
|
|
|
r-viridis
|
|
|
|
r-viridislite
|
|
|
|
r-visnetwork
|
|
|
|
r-vsn
|
|
|
|
r-webshot
|
r-webshot: new package at 0.5.1 (#9824)
|
2018-11-12 18:38:48 -06:00 |
|
r-whisker
|
|
|
|
r-withr
|
|
|
|
r-xde
|
|
|
|
r-xgboost
|
|
|
|
r-xlconnect
|
|
|
|
r-xlconnectjars
|
|
|
|
r-xlsx
|
|
|
|
r-xlsxjars
|
|
|
|
r-xmapbridge
|
|
|
|
r-xml
|
|
|
|
r-xml2
|
|
|
|
r-xnomial
|
r-xnomial: new package at 1.0.4 (#10111)
|
2018-12-15 08:43:08 -06:00 |
|
r-xtable
|
|
|
|
r-xts
|
|
|
|
r-xvector
|
|
|
|
r-yaml
|
|
|
|
r-yapsa
|
|
|
|
r-yaqcaffy
|
|
|
|
r-yarn
|
|
|
|
r-zlibbioc
|
|
|
|
r-zoo
|
|
|
|
racon
|
|
|
|
raft
|
|
|
|
ragel
|
|
|
|
raja
|
|
|
|
randfold
|
|
|
|
random123
|
|
|
|
randrproto
|
|
|
|
range-v3
|
|
|
|
rankstr
|
|
|
|
rapidjson
|
|
|
|
ravel
|
|
|
|
raxml
|
|
|
|
ray
|
|
|
|
rclone
|
|
|
|
rdma-core
|
|
|
|
rdp-classifier
|
|
|
|
re2c
|
|
|
|
readfq
|
|
|
|
readline
|
|
|
|
recordproto
|
|
|
|
redset
|
|
|
|
redundans
|
|
|
|
regcm
|
New package: RegCM, regional climate model. (#9655)
|
2018-10-30 13:32:59 -07:00 |
|
relion
|
|
|
|
rempi
|
|
|
|
rename
|
|
|
|
rendercheck
|
|
|
|
renderproto
|
|
|
|
repeatmasker
|
|
|
|
resourceproto
|
|
|
|
revbayes
|
|
|
|
rgb
|
|
|
|
rhash
|
|
|
|
rlwrap
|
|
|
|
rmats
|
|
|
|
rmlab
|
|
|
|
rna-seqc
|
|
|
|
rngstreams
|
|
|
|
rocksdb
|
Added RocksDB package (#10084)
|
2018-12-17 17:36:45 -06:00 |
|
rockstar
|
|
|
|
root
|
|
|
|
rose
|
|
|
|
ross
|
|
|
|
rr
|
|
|
|
rsbench
|
|
|
|
rsem
|
|
|
|
rstart
|
|
|
|
rsync
|
|
|
|
rtags
|
|
|
|
rtax
|
|
|
|
ruby
|
ruby: add 2.5.3 (#9793)
|
2018-11-13 09:35:47 -06:00 |
|
ruby-gnuplot
|
|
|
|
ruby-narray
|
|
|
|
ruby-ronn
|
|
|
|
ruby-rubyinline
|
|
|
|
ruby-svn2git
|
|
|
|
ruby-terminal-table
|
|
|
|
rust
|
Rewrite Rust package (#9998)
|
2018-12-05 20:15:45 +01:00 |
|
rust-bindgen
|
|
|
|
sabre
|
|
|
|
saga-gis
|
Add spack package for saga-gis (#10018)
|
2018-12-17 19:10:50 -06:00 |
|
sailfish
|
|
|
|
salmon
|
|
|
|
sambamba
|
|
|
|
samblaster
|
|
|
|
samrai
|
|
|
|
samtools
|
samtools: make zlib/bzip2 dependencies unconditional (#9866)
|
2018-11-19 10:36:48 -08:00 |
|
sandbox
|
|
|
|
sas
|
|
|
|
satsuma2
|
|
|
|
savanna
|
|
|
|
saws
|
|
|
|
sbt
|
|
|
|
scala
|
|
|
|
scalasca
|
|
|
|
scallop
|
scallop: new package at 0.10.3 (#10041)
|
2018-12-07 17:39:07 -08:00 |
|
scalpel
|
|
|
|
scan-for-matches
|
|
|
|
scons
|
|
|
|
scorec-core
|
|
|
|
scorep
|
|
|
|
scotch
|
|
|
|
scr
|
added sha256 for scr v1.2.0-2 (#10082)
|
2018-12-11 22:56:23 -06:00 |
|
screen
|
|
|
|
scripts
|
|
|
|
scrnsaverproto
|
|
|
|
sctk
|
|
|
|
sdl2
|
|
|
|
sdl2-image
|
|
|
|
sdsl-lite
|
sdsl-lite: new package at 2.1.1 (#10013)
|
2018-12-04 17:20:10 -06:00 |
|
seacas
|
SEACAS: Add preliminary support for seacas package (#9972)
|
2018-12-17 12:57:31 -06:00 |
|
sed
|
|
|
|
sentieon-genomics
|
add package Feature/sentieon (#9557)
|
2018-10-29 15:02:27 -05:00 |
|
seqan
|
|
|
|
seqprep
|
|
|
|
seqtk
|
|
|
|
serf
|
|
|
|
sessreg
|
|
|
|
setxkbmap
|
|
|
|
sga
|
|
|
|
shapeit
|
|
|
|
shared-mime-info
|
|
|
|
shiny-server
|
|
|
|
shocklibs
|
|
|
|
shoremap
|
|
|
|
shortbred
|
|
|
|
shortstack
|
|
|
|
showfont
|
|
|
|
shuffile
|
|
|
|
sickle
|
|
|
|
siesta
|
|
|
|
signalp
|
|
|
|
signify
|
|
|
|
silo
|
|
|
|
simplemoc
|
|
|
|
simul
|
|
|
|
simulationio
|
|
|
|
singularity
|
|
|
|
skilion-onedrive
|
|
|
|
sleef
|
|
|
|
slepc
|
slepc: fix homepage URL (#10199)
|
2018-12-26 08:41:09 -06:00 |
|
slurm
|
|
|
|
smalt
|
|
|
|
smproxy
|
|
|
|
snakemake
|
|
|
|
snap
|
|
|
|
snap-berkeley
|
|
|
|
snap-korf
|
|
|
|
snappy
|
|
|
|
snbone
|
|
|
|
sniffles
|
|
|
|
snpeff
|
snpeff: add wrapper for SnpSift.jar (#9674)
|
2018-11-06 08:36:47 -06:00 |
|
snphylo
|
|
|
|
snptest
|
|
|
|
soap2
|
|
|
|
soapdenovo2
|
|
|
|
soapdenovo-trans
|
|
|
|
soapindel
|
|
|
|
soapsnp
|
|
|
|
sofa-c
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
sosflow
|
|
|
|
sowing
|
|
|
|
sox
|
|
|
|
spades
|
Spades: Add version 3.13.0 (#10033)
|
2018-12-07 11:24:17 -06:00 |
|
span-lite
|
|
|
|
spark
|
|
|
|
sparsehash
|
|
|
|
sparta
|
|
|
|
spdlog
|
spdlog: add new versions (#9636)
|
2018-10-25 12:45:09 +02:00 |
|
spectrum-mpi
|
|
|
|
speex
|
|
|
|
spglib
|
|
|
|
sph2pipe
|
|
|
|
spherepack
|
|
|
|
spindle
|
|
|
|
spm
|
Feature/spm (#10053)
|
2018-12-13 12:43:45 -06:00 |
|
spot
|
|
|
|
sqlite
|
sqlite: add 3.26.0 (#10138)
|
2018-12-19 17:07:03 -06:00 |
|
sqlitebrowser
|
|
|
|
squid
|
|
|
|
sra-toolkit
|
|
|
|
ssht
|
|
|
|
sspace-longread
|
|
|
|
sspace-standard
|
|
|
|
sst-core
|
|
|
|
sst-dumpi
|
|
|
|
sst-macro
|
|
|
|
stacks
|
|
|
|
staden-io-lib
|
|
|
|
star
|
|
|
|
star-ccm-plus
|
|
|
|
startup-notification
|
|
|
|
stat
|
added stat version 4.0.1 (#9607)
|
2018-10-22 18:59:44 -07:00 |
|
stata
|
Add Stata package (#10189)
|
2018-12-26 16:17:42 -06:00 |
|
stc
|
|
|
|
steps
|
|
|
|
stow
|
|
|
|
strace
|
|
|
|
stream
|
|
|
|
strelka
|
|
|
|
stress
|
|
|
|
string-view-lite
|
Add new versions of optional-lite and string-view-lite (#10179)
|
2018-12-27 17:03:21 +01:00 |
|
stringtie
|
stringtie: add version 1.3.4d (#9791)
|
2018-11-13 10:20:30 -06:00 |
|
structure
|
|
|
|
strumpack
|
strumpack: update to version 3.1.1 (#9666)
|
2018-10-29 15:34:14 -05:00 |
|
sublime-text
|
|
|
|
subread
|
|
|
|
subversion
|
|
|
|
suite-sparse
|
suite-sparse: add GCC version constraint (#9622)
|
2018-10-25 17:20:25 -07:00 |
|
sumaclust
|
|
|
|
sundials
|
sundials: update to version 3.2.1 (#9603)
|
2018-10-22 18:04:53 -05:00 |
|
superlu
|
|
|
|
superlu-dist
|
superlu-dist: update v6.1.0 checksum (#10078)
|
2018-12-13 09:05:47 -06:00 |
|
superlu-mt
|
|
|
|
supernova
|
|
|
|
sw4lite
|
|
|
|
swap-assembler
|
|
|
|
swarm
|
|
|
|
swfft
|
|
|
|
swiftsim
|
|
|
|
swig
|
|
|
|
symengine
|
|
|
|
sympol
|
|
|
|
sz
|
|
|
|
tabix
|
|
|
|
talass
|
TALASS package: replace old version with new version (#9703)
|
2018-11-12 23:38:03 -06:00 |
|
talloc
|
|
|
|
tantan
|
|
|
|
tar
|
|
|
|
targetp
|
|
|
|
task
|
|
|
|
taskd
|
|
|
|
tasmanian
|
|
|
|
tassel
|
|
|
|
tau
|
|
|
|
tcl
|
|
|
|
tcl-itcl
|
|
|
|
tcl-tcllib
|
|
|
|
tcl-tclxml
|
|
|
|
tclap
|
|
|
|
tcoffee
|
|
|
|
tcptrace
|
|
|
|
tcsh
|
|
|
|
tealeaf
|
|
|
|
templight
|
|
|
|
templight-tools
|
|
|
|
tetgen
|
|
|
|
tethex
|
|
|
|
texinfo
|
|
|
|
texlive
|
|
|
|
tfel
|
Update TFEL package (#9995)
|
2018-12-20 15:47:24 -06:00 |
|
the-platinum-searcher
|
|
|
|
the-silver-searcher
|
|
|
|
thornado-mini
|
|
|
|
thrift
|
thrift: add missing pkgconfig dependency (#9834)
|
2018-11-13 09:34:51 -06:00 |
|
thrust
|
|
|
|
tig
|
|
|
|
time
|
new package: time (#9842)
|
2018-11-14 09:38:37 -06:00 |
|
tinyxml
|
|
|
|
tinyxml2
|
|
|
|
tioga
|
Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)
|
2018-10-24 14:39:12 +02:00 |
|
tk
|
|
|
|
tldd
|
|
|
|
tmalign
|
|
|
|
tmhmm
|
|
|
|
tmux
|
Add tmux@2.8 (#10010)
|
2018-12-04 08:37:09 -06:00 |
|
tmuxinator
|
|
|
|
tophat
|
|
|
|
tppred
|
|
|
|
tracer
|
TraceR: add release tag/version (#10054)
|
2018-12-08 01:09:48 -06:00 |
|
transabyss
|
|
|
|
transdecoder
|
|
|
|
transposome
|
|
|
|
transset
|
|
|
|
trapproto
|
|
|
|
tree
|
|
|
|
treesub
|
|
|
|
trf
|
trf: add version 4.07b and install fixes (#10093)
|
2018-12-13 12:42:26 -06:00 |
|
triangle
|
|
|
|
trilinos
|
xsdk-0.4.0: add/update package versions: (#10038)
|
2018-12-23 17:35:03 -08:00 |
|
trimal
|
new package: trimal (starting at 1.4.1) (#9592)
|
2018-10-19 18:01:55 -07:00 |
|
trimgalore
|
|
|
|
trimmomatic
|
Trimmomatic: Add version 0.38 (#9883)
|
2018-11-19 15:56:49 -06:00 |
|
trinity
|
|
|
|
trinotate
|
Packages/trinotate fix (#9745)
|
2018-11-13 10:55:59 -06:00 |
|
trnascan-se
|
|
|
|
turbine
|
|
|
|
turbomole
|
|
|
|
tut
|
|
|
|
twm
|
|
|
|
tycho2
|
|
|
|
typhon
|
Add version 2.0.2 of BookLeaf_Cpp and version 3.0.2 of Typhon. (#9662)
|
2018-11-02 13:30:52 -07:00 |
|
typhonio
|
|
|
|
uberftp
|
|
|
|
ucx
|
Add UCX v1.4.0 (#9881)
|
2018-11-19 13:20:22 -06:00 |
|
udunits2
|
|
|
|
ufo-core
|
|
|
|
ufo-filters
|
|
|
|
umpire
|
|
|
|
unblur
|
|
|
|
uncrustify
|
|
|
|
unibilium
|
Added missing libtool dependencies to libvterm and unibilium (#10007)
|
2018-12-04 13:01:37 +01:00 |
|
unifycr
|
Fix pkg-config dependencies (#9738)
|
2018-11-13 00:01:41 -06:00 |
|
unison
|
|
|
|
units
|
|
|
|
unixodbc
|
|
|
|
unuran
|
|
|
|
unzip
|
|
|
|
usearch
|
|
|
|
util-linux
|
|
|
|
util-macros
|
|
|
|
uuid
|
|
|
|
valgrind
|
valgrind: add 3.14.0 (#9648)
|
2018-10-26 18:59:16 -07:00 |
|
vampirtrace
|
|
|
|
vardictjava
|
|
|
|
varscan
|
|
|
|
vc
|
|
|
|
vcftools
|
|
|
|
vcsh
|
|
|
|
vdt
|
|
|
|
vecgeom
|
|
|
|
veclibfort
|
|
|
|
vegas2
|
|
|
|
veloc
|
|
|
|
velvet
|
velvet: Add missing zlib dependency to fix installation errors (#10212)
|
2018-12-28 13:02:16 -06:00 |
|
verilator
|
|
|
|
verrou
|
Fix and update verrou (#9847)
|
2018-11-15 10:22:13 -06:00 |
|
videoproto
|
|
|
|
viennarna
|
|
|
|
viewres
|
|
|
|
vim
|
|
|
|
virtualgl
|
|
|
|
visit
|
VisIt: build vtk without mpi support (#9649)
|
2018-10-26 19:01:39 -07:00 |
|
vizglow
|
|
|
|
vmatch
|
|
|
|
voropp
|
Fixing problems with lammps dependencies voropp and latte (#9909)
|
2018-11-27 16:55:21 -07:00 |
|
votca-csg
|
|
|
|
votca-ctp
|
|
|
|
votca-tools
|
|
|
|
votca-xtp
|
|
|
|
vpfft
|
|
|
|
vpic
|
|
|
|
vsearch
|
|
|
|
vt
|
vt package: add zlib dependency (#9870)
|
2018-11-16 12:52:15 -08:00 |
|
vtk
|
vtk: remove redundant option setting (#9597)
|
2018-10-30 12:47:48 -07:00 |
|
vtkh
|
|
|
|
vtkm
|
Remove openmp version guard in vtkm and add precision options (#10005)
|
2018-12-04 11:53:17 -08:00 |
|
wannier90
|
|
|
|
warpx
|
WarpX: Added dependency on fftw when +psatd (#10144)
|
2018-12-18 20:11:08 -06:00 |
|
wcslib
|
|
|
|
wget
|
|
|
|
wgsim
|
|
|
|
windowswmproto
|
|
|
|
wireshark
|
|
|
|
workrave
|
|
|
|
wt
|
wt: add missing pkgconfig dependency and fix boost version range (#9835)
|
2018-11-13 09:53:44 -06:00 |
|
wx
|
|
|
|
wxpropgrid
|
|
|
|
x11perf
|
|
|
|
xapian-core
|
|
|
|
xauth
|
|
|
|
xbacklight
|
|
|
|
xbiff
|
|
|
|
xbitmaps
|
|
|
|
xbraid
|
|
|
|
xcalc
|
|
|
|
xcb-demo
|
|
|
|
xcb-proto
|
|
|
|
xcb-util
|
|
|
|
xcb-util-cursor
|
|
|
|
xcb-util-errors
|
|
|
|
xcb-util-image
|
|
|
|
xcb-util-keysyms
|
|
|
|
xcb-util-renderutil
|
|
|
|
xcb-util-wm
|
|
|
|
xcb-util-xrm
|
|
|
|
xclip
|
|
|
|
xclipboard
|
|
|
|
xclock
|
|
|
|
xcmiscproto
|
|
|
|
xcmsdb
|
|
|
|
xcompmgr
|
|
|
|
xconsole
|
|
|
|
xcursor-themes
|
|
|
|
xcursorgen
|
|
|
|
xdbedizzy
|
|
|
|
xditview
|
|
|
|
xdm
|
|
|
|
xdpyinfo
|
|
|
|
xdriinfo
|
|
|
|
xedit
|
|
|
|
xerces-c
|
|
|
|
xeus
|
xeus: new package (#9682)
|
2018-10-31 20:23:44 -07:00 |
|
xev
|
|
|
|
xextproto
|
|
|
|
xeyes
|
|
|
|
xf86bigfontproto
|
|
|
|
xf86dga
|
|
|
|
xf86dgaproto
|
|
|
|
xf86driproto
|
|
|
|
xf86miscproto
|
|
|
|
xf86rushproto
|
|
|
|
xf86vidmodeproto
|
|
|
|
xfd
|
|
|
|
xfindproxy
|
|
|
|
xfontsel
|
|
|
|
xfs
|
|
|
|
xfsinfo
|
|
|
|
xfwp
|
|
|
|
xgamma
|
|
|
|
xgboost
|
xgboost: new package at 0.81 (#9854)
|
2018-12-27 07:42:44 +01:00 |
|
xgc
|
|
|
|
xhmm
|
|
|
|
xhost
|
|
|
|
xineramaproto
|
|
|
|
xinit
|
|
|
|
xinput
|
|
|
|
xios
|
|
|
|
xkbcomp
|
|
|
|
xkbdata
|
|
|
|
xkbevd
|
|
|
|
xkbprint
|
|
|
|
xkbutils
|
|
|
|
xkeyboard-config
|
|
|
|
xkill
|
|
|
|
xload
|
|
|
|
xlogo
|
|
|
|
xlsatoms
|
|
|
|
xlsclients
|
|
|
|
xlsfonts
|
|
|
|
xmag
|
|
|
|
xman
|
|
|
|
xmessage
|
|
|
|
xmh
|
|
|
|
xmlf90
|
|
|
|
xmlto
|
|
|
|
xmodmap
|
|
|
|
xmore
|
|
|
|
xorg-cf-files
|
|
|
|
xorg-docs
|
|
|
|
xorg-gtest
|
|
|
|
xorg-server
|
|
|
|
xorg-sgml-doctools
|
|
|
|
xphelloworld
|
|
|
|
xplor-nih
|
|
|
|
xplsprinters
|
|
|
|
xpr
|
|
|
|
xprehashprinterlist
|
|
|
|
xprop
|
|
|
|
xproto
|
|
|
|
xproxymanagementprotocol
|
|
|
|
xqilla
|
|
|
|
xrandr
|
|
|
|
xrdb
|
|
|
|
xrefresh
|
|
|
|
xrootd
|
|
|
|
xrx
|
|
|
|
xsbench
|
|
|
|
xscope
|
|
|
|
xsd
|
|
|
|
xsdk
|
xsdk-0.4.0: add/update package versions: (#10038)
|
2018-12-23 17:35:03 -08:00 |
|
xsdktrilinos
|
|
|
|
xset
|
|
|
|
xsetmode
|
|
|
|
xsetpointer
|
|
|
|
xsetroot
|
|
|
|
xsimd
|
|
|
|
xsm
|
|
|
|
xstdcmap
|
|
|
|
xtensor
|
|
|
|
xtensor-python
|
|
|
|
xterm
|
|
|
|
xtl
|
|
|
|
xtrans
|
|
|
|
xtrap
|
|
|
|
xts
|
|
|
|
xvidtune
|
|
|
|
xvinfo
|
|
|
|
xwd
|
|
|
|
xwininfo
|
|
|
|
xwud
|
|
|
|
xxhash
|
|
|
|
xz
|
|
|
|
yajl
|
|
|
|
yambo
|
|
|
|
yaml-cpp
|
|
|
|
yasm
|
|
|
|
yorick
|
|
|
|
z3
|
|
|
|
zeromq
|
xeus: new package (#9682)
|
2018-10-31 20:23:44 -07:00 |
|
zfp
|
|
|
|
zip
|
|
|
|
zlib
|
remove spurious print in zlib patch method
|
2018-12-06 15:48:23 -08:00 |
|
zoltan
|
zoltan: rely on MPI wrappers instead of guessing MPI libraries (#8986)
|
2018-12-17 12:45:49 -06:00 |
|
zsh
|
|
|
|
zstd
|
|
|
