| .. |
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abinit
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abyss
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abyss: added missing libtool dependency (#7054)
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2018-01-31 14:01:49 +01:00 |
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accfft
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accfft: added new package (#7213)
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2018-02-23 23:29:12 +01:00 |
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ack
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Version update for 2.22 (#7023)
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2018-01-22 07:12:00 +01:00 |
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activeharmony
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adept-utils
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adios
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adios2
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ADIOS 2.1.0 (#7240)
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2018-02-14 13:54:13 -08:00 |
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adlbx
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adol-c
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albert
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alglib
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alglib: fix on Darwin (#7534)
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2018-03-20 08:33:14 -05:00 |
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allinea-forge
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allinea-reports
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allpaths-lg
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alquimia
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alsa-lib
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amg
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amg2013
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amp
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ampliconnoise
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amrex
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andi
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angsd
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angsd: new version, and conflict for newer htslib with old version (#7122)
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2018-02-05 18:33:12 +01:00 |
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ant
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antlr
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ape
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apex
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applewmproto
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appres
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apr
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apr-util
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archer
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argp-standalone
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argp-standalone@1.3: new package (#7014)
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2018-01-23 22:49:17 +01:00 |
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argtable
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arlecore
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armadillo
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arpack-ng
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arpack-ng: add develop (#7458)
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2018-03-12 09:06:37 +01:00 |
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ascent
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updates to conduit and ascent packages (#7040)
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2018-02-12 10:20:46 -08:00 |
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asciidoc
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aspa
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aspcud
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aspcud@1.9.4: new package (#7094)
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2018-02-27 13:16:40 +01:00 |
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aspell
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aspell6-de
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aspell6-en
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aspell6-es
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assimp
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astra
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astral
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astral: needs zip (#7443)
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2018-03-10 10:56:59 +09:00 |
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astyle
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atk
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atlas
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Changed keyword argument 'recurse' to 'recursive'
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2018-02-13 02:18:28 -08:00 |
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atom-dft
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atompaw
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atop
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augustus
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Augustus hash (#7447)
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2018-03-09 16:05:39 -08:00 |
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autoconf
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autodock-vina
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autogen
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automaded
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automake
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bamtools
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bamutil
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bamutil: needs zlib (#7444)
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2018-03-21 16:53:55 -05:00 |
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barrnap
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bash
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bash-completion
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bats
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bazel
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Add latest versions of bazel (#7542)
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2018-03-21 19:52:28 -05:00 |
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bbcp
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bbmap
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bcftools
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bcl2fastq2
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bdftopcf
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bdw-gc
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bear
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beast2
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bedtools2
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beforelight
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benchmark
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berkeley-db
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bertini
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bib2xhtml
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bigreqsproto
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binutils
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libtool, binutils: fix darwin linking (#7073)
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2018-01-28 15:36:24 +01:00 |
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bioawk
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biopieces
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bison
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bitmap
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blast-plus
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blat
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blaze
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bliss
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blitz
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bmake
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bmake@20171207: new package (#7099)
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2018-01-31 13:42:41 +01:00 |
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bml
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bml: enable MPI by default (#7324)
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2018-02-22 09:04:49 -07:00 |
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bohrium
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boost
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Boost: More Bintray (#7389)
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2018-03-09 09:57:41 -08:00 |
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boostmplcartesianproduct
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bowtie
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bowtie2
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bowtie2: Add version 2.3.4.1 (#7252)
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2018-03-06 18:48:48 +01:00 |
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boxlib
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bpp-core
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bpp-phyl
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bpp-seq
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bpp-suite
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bracken
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bracken: Create new package (#7375)
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2018-03-05 14:16:27 +01:00 |
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braker
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braker: added list_url (#7058)
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2018-03-06 08:51:43 +01:00 |
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branson
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branson: needs mpi-2 (#7319)
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2018-02-26 06:35:47 -07:00 |
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breakdancer
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breseq
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brigand
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bsseeker2
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bucky
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busco
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butter
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bwa
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byobu
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bzip2
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change recurse into recursive in a few places (#7342)
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2018-02-28 20:15:26 +01:00 |
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c-blosc
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caffe
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cairo
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caliper
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callpath
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candle-benchmarks
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ECP-CANDLE benchmark script (#7271)
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2018-02-22 09:54:46 -08:00 |
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cantera
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canu
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cap3
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cares
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cask
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casper
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catalyst
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catch
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cbench
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cbench set its environment using setup_environment (#7236)
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2018-02-21 06:42:51 +01:00 |
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cblas
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cbtf
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OpenSpeedShop package: add support for building on cray (#7338)
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2018-03-07 14:26:07 -08:00 |
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cbtf-argonavis
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OpenSpeedShop package: add support for building on cray (#7338)
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2018-03-07 14:26:07 -08:00 |
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cbtf-argonavis-gui
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OpenSpeedShop package: add support for building on cray (#7338)
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2018-03-07 14:26:07 -08:00 |
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cbtf-krell
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OpenSpeedShop package: add support for building on cray (#7338)
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2018-03-07 14:26:07 -08:00 |
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cbtf-lanl
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OpenSpeedShop package: add support for building on cray (#7338)
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2018-03-07 14:26:07 -08:00 |
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ccache
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cctools
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cdbfasta
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cdbfasta: needs zlib (#7413)
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2018-03-07 15:42:37 -08:00 |
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cdd
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cddlib
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cdhit
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cdo
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Package 'cdo': new versions. (#7250)
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2018-02-16 13:39:56 +01:00 |
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cereal
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cfitsio
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Version update for cfitsio (#7032)
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2018-01-23 09:44:40 +01:00 |
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cgal
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cgm
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cgns
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charm
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check
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chlorop
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chombo
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cistem
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new package: cistem (#7438)
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2018-03-09 10:19:10 -08:00 |
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cityhash
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clamr
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clamr: needs cmake-3.1 (#7297)
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2018-02-21 09:11:50 -08:00 |
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cleaveland4
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cleverleaf
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clfft
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clhep
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Fix GEANT4 and make more portable and flexible (#6956)
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2018-01-23 10:13:08 +01:00 |
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clingo
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clingo@5.2.2: new package (#7091)
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2018-02-03 10:05:06 +01:00 |
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cloc
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cloog
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cloverleaf
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cloverleaf3d
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clustalo
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clustalw
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cmake
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cmake: new version (#7429)
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2018-03-09 09:18:58 +01:00 |
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cmocka
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cmor
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Add cmor version 3.3.0 (#7197)
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2018-03-06 18:16:52 +01:00 |
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cnmem
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cnpy
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LBANN OS X (#7105)
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2018-01-31 09:38:53 -08:00 |
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cntk
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cntk1bitsgd
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codar-cheetah
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coevp
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cohmm
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cohmm: use more sane defaults (#7296)
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2018-02-21 15:03:53 -07:00 |
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coinhsl
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colordiff
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Colordiff: new package (#7070)
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2018-03-06 13:14:29 +01:00 |
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comd
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comd: more sane default (#7046)
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2018-02-08 12:36:23 -05:00 |
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compiz
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compositeproto
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conduit
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update for conduit 0.3.1 release (#7344)
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2018-03-05 11:04:21 +01:00 |
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constype
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converge
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coreutils
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corset
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cosmomc
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cosp2
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cp2k
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cppad
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cppcheck
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cpprestsdk
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cppunit
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cppzmq
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cpu-features
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cpu_features (#7302)
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2018-02-26 20:47:22 +01:00 |
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cram
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cryptopp
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cscope
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csdp
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ctffind
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cub
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cube
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cube: Fix qt detection (#7242)
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2018-03-14 09:01:11 +01:00 |
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cuda
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cuda-memtest
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cudnn
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cufflinks
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cups
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curl
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Add the libssh2 variant for curl. (#6980)
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2018-03-06 18:41:22 +01:00 |
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cvs
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czmq
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dakota
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daligner
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damageproto
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damselfly
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darshan-runtime
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darshan-util
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dash
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datamash
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dataspaces
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dbus
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dealii
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deconseq-standalone
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new package: deconseq-standalone (#7290)
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2018-03-09 10:13:41 -08:00 |
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dejagnu
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delly2
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denovogear
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dia
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Fix gtkplus build by hardcoding X11 support (#6971)
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2018-01-23 15:24:20 -08:00 |
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dialign-tx
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diamond
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diffsplice
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new package: diffsplice (#7187)
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2018-02-09 20:15:58 -08:00 |
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direnv
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discovar
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discovardenovo
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dislin
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dislin: new package (#7305)
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2018-03-08 06:38:17 +01:00 |
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dlpack
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dmlc-core
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dmxproto
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docbook-xml
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docbook-xsl
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dos2unix
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double-conversion
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doxygen
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dri2proto
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dri3proto
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dsdp
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Add DSDP package (#7526)
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2018-03-20 07:08:18 +01:00 |
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dtcmp
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dyninst
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Dyninst links broken, everything switched to github (#6066)
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2018-03-22 20:29:17 -05:00 |
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ea-utils
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easybuild
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ebms
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ebms: needs mpi-2 (#7320)
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2018-02-26 06:35:34 -07:00 |
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eccodes
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ecp-proxy-apps
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editres
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eigen
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Add latest version of eigen (#7530)
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2018-03-22 07:25:26 -05:00 |
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elemental
|
Changed keyword argument 'recurse' to 'recursive'
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2018-02-13 02:18:28 -08:00 |
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elfutils
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elfutils: document conflict with clang (#7096)
|
2018-03-21 16:00:49 -05:00 |
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elk
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elpa
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Changed keyword argument 'recurse' to 'recursive'
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2018-02-13 02:18:28 -08:00 |
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emacs
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Fix gtkplus build by hardcoding X11 support (#6971)
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2018-01-23 15:24:20 -08:00 |
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emboss
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encodings
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environment-modules
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es
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esmf
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espresso
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yambo: added new package (#7301)
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2018-02-22 12:11:51 +01:00 |
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essl
|
new package: essl (#6335)
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2018-01-26 10:38:37 -08:00 |
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ethminer
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etsf-io
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everytrace
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everytrace-example
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evieext
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exabayes
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examinimd
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Added Tagged Release of ExaMiniMD (#7485)
|
2018-03-14 18:37:21 -06:00 |
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exampm
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exasp2
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Generalized ExaSP2 Install (#7422)
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2018-03-07 15:46:53 -08:00 |
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exmcutils
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exodusii
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exonerate
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expat
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expect
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express
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extrae
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exuberant-ctags
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f90cache
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falcon
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farmhash
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fastjar
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fastmath
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fastme
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fastphase
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fastq-screen
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fastqc
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fastqvalidator
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fasttree
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fastx-toolkit
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fenics
|
Fix dependency conflict in FEniCS. (#7404)
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2018-03-13 08:04:09 +01:00 |
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ferret
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ffmpeg
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fftw
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change recurse into recursive in a few places (#7342)
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2018-02-28 20:15:26 +01:00 |
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fimpute
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findutils
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fio
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fish
|
Update fish url for fish 2.7.1 (#7089)
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2018-02-04 09:05:44 +01:00 |
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fixesproto
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flac
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flang
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flann
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flash
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flecsale
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flecsi
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flex
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flint
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flit
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fltk
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flux
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fluxbox
|
fluxbox lightweight window manager (#7169)
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2018-02-12 19:35:18 +01:00 |
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fmt
|
fmt: add version (#7415)
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2018-03-07 13:59:20 +01:00 |
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foam-extend
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folly
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font-adobe-75dpi
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font-adobe-100dpi
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font-adobe-utopia-75dpi
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font-adobe-utopia-100dpi
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font-adobe-utopia-type1
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font-alias
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font-arabic-misc
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font-bh-75dpi
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font-bh-100dpi
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font-bh-lucidatypewriter-75dpi
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font-bh-lucidatypewriter-100dpi
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font-bh-ttf
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font-bh-type1
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font-bitstream-75dpi
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font-bitstream-100dpi
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font-bitstream-speedo
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font-bitstream-type1
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font-cronyx-cyrillic
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font-cursor-misc
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font-daewoo-misc
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font-dec-misc
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font-ibm-type1
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font-isas-misc
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font-jis-misc
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font-micro-misc
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font-misc-cyrillic
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font-misc-ethiopic
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font-misc-meltho
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font-misc-misc
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font-mutt-misc
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font-schumacher-misc
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font-screen-cyrillic
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font-sony-misc
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font-sun-misc
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font-util
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font-winitzki-cyrillic
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font-xfree86-type1
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fontcacheproto
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fontconfig
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fontsproto
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fonttosfnt
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fpc
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|
fr-hit
|
fr-hit: Create new package (#7132)
|
2018-01-31 19:28:48 +01:00 |
|
freebayes
|
|
|
|
freetype
|
|
|
|
fseq
|
|
|
|
fsl
|
|
|
|
fslsfonts
|
|
|
|
fstobdf
|
|
|
|
funhpc
|
|
|
|
gapbs
|
|
|
|
gapcloser
|
|
|
|
gapfiller
|
|
|
|
gasnet
|
|
|
|
gatk
|
|
|
|
gaussian
|
|
|
|
gawk
|
|
|
|
gblocks
|
|
|
|
gcc
|
gcc: add version 7.3.0 (#7097)
|
2018-01-31 13:41:12 +01:00 |
|
gccmakedep
|
|
|
|
gccxml
|
|
|
|
gconf
|
|
|
|
gcta
|
gcta: new package (#7425)
|
2018-03-07 15:40:51 -08:00 |
|
gdal
|
macOS Fix for GDAL (#7155)
|
2018-02-03 10:06:35 +01:00 |
|
gdb
|
help gdb pick up python3 (#7104)
|
2018-02-28 23:13:06 -08:00 |
|
gdbm
|
gdbm: fix lmod global name 'spack_cc' undefined (#7225)
|
2018-02-14 08:41:50 +01:00 |
|
gdk-pixbuf
|
|
|
|
geant4
|
Fix GEANT4 and make more portable and flexible (#6956)
|
2018-01-23 10:13:08 +01:00 |
|
gearshifft
|
|
|
|
gemmlowp
|
|
|
|
genemark-et
|
|
|
|
genometools
|
|
|
|
geos
|
Update package.py (#7327)
|
2018-03-06 18:28:02 +01:00 |
|
gettext
|
|
|
|
gflags
|
|
|
|
ghost
|
Ghost as cuda package (#7501)
|
2018-03-20 11:23:45 -05:00 |
|
ghostscript
|
|
|
|
ghostscript-fonts
|
|
|
|
giflib
|
Fix giflib unit tests on macOS/BSD (#7519)
|
2018-03-22 19:38:17 -05:00 |
|
git
|
|
|
|
git-imerge
|
git-imerge@1.1.0: new package (#7203)
|
2018-02-09 19:48:11 +01:00 |
|
git-lfs
|
|
|
|
gl2ps
|
|
|
|
glew
|
|
|
|
glfmultiples
|
new package: Glfmultiples (#7055)
|
2018-02-12 19:35:57 -08:00 |
|
glib
|
glib: updated package and fixed issues with dtrace (#7493)
|
2018-03-19 06:38:42 +01:00 |
|
glimmer
|
glimmer: Create new package (#7208)
|
2018-02-11 22:22:34 +01:00 |
|
glm
|
|
|
|
global
|
|
|
|
globalarrays
|
|
|
|
globus-toolkit
|
|
|
|
glog
|
|
|
|
glpk
|
Add latest version of GLPK (#7521)
|
2018-03-19 16:18:42 -05:00 |
|
glproto
|
|
|
|
gmake
|
|
|
|
gmap-gsnap
|
updating package: gmap-gsnap (#7285)
|
2018-02-19 22:09:05 -08:00 |
|
gmime
|
|
|
|
gmp
|
gmp: add oldish version 5.1.3 with checksum (#7510)
|
2018-03-17 18:22:42 -05:00 |
|
gmsh
|
|
|
|
gnat
|
|
|
|
gnu-prolog
|
|
|
|
gnupg
|
|
|
|
gnuplot
|
|
|
|
gnutls
|
|
|
|
go
|
|
|
|
go-bootstrap
|
|
|
|
gobject-introspection
|
|
|
|
googletest
|
|
|
|
gotcha
|
|
|
|
gource
|
|
|
|
gperf
|
|
|
|
gperftools
|
|
|
|
grackle
|
grackle package: add float option (#7196)
|
2018-02-12 14:32:24 -08:00 |
|
gradle
|
|
|
|
grandr
|
|
|
|
graphlib
|
|
|
|
graphmap
|
|
|
|
graphviz
|
|
|
|
grib-api
|
|
|
|
groff
|
|
|
|
gromacs
|
gromacs: add v2018 (#7050)
|
2018-03-06 18:37:45 +01:00 |
|
gsl
|
|
|
|
gslib
|
new package: gslib (#6328)
|
2018-01-23 10:42:06 -08:00 |
|
gtkorvo-atl
|
|
|
|
gtkorvo-cercs-env
|
|
|
|
gtkorvo-dill
|
|
|
|
gtkorvo-enet
|
|
|
|
gtkplus
|
Fix gtkplus build by hardcoding X11 support (#6971)
|
2018-01-23 15:24:20 -08:00 |
|
gts
|
|
|
|
guidance
|
|
|
|
guile
|
|
|
|
h5hut
|
|
|
|
h5part
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
hdf5: fixing ~/+ fortran builds; updated to version 0.8.0 (#7260)
|
2018-02-19 22:13:13 -08:00 |
|
hacckernels
|
|
|
|
hadoop
|
|
|
|
hapcut2
|
|
|
|
haploview
|
|
|
|
harfbuzz
|
|
|
|
harminv
|
|
|
|
hdf
|
|
|
|
hdf5
|
adds patches required to build hdf5 1.8.10 (#7386)
|
2018-03-06 12:49:36 -08:00 |
|
hdf5-blosc
|
|
|
|
help2man
|
|
|
|
hepmc
|
|
|
|
heppdt
|
|
|
|
highfive
|
highfive: Update to version 1.5 (#7041)
|
2018-02-03 10:22:03 +01:00 |
|
highwayhash
|
|
|
|
hiop
|
new package: hiop (#7039)
|
2018-03-01 15:26:28 -08:00 |
|
hisat2
|
|
|
|
hmmer
|
|
|
|
hoomd-blue
|
hoomd-blue version bump and compiler updated (#7021)
|
2018-03-08 09:35:59 +01:00 |
|
hpccg
|
|
|
|
hpctoolkit
|
|
|
|
hpctoolkit-externals
|
|
|
|
hpgmg
|
hpgmg: more sane defaults for a proxy (#7330)
|
2018-02-26 06:35:17 -07:00 |
|
hpl
|
|
|
|
hpx
|
|
|
|
hpx5
|
|
|
|
hsakmt
|
|
|
|
hstr
|
|
|
|
htop
|
|
|
|
htslib
|
|
|
|
httpie
|
|
|
|
hub
|
|
|
|
hunspell
|
|
|
|
hwloc
|
hwloc: constrain dependency on numactl (#7509)
|
2018-03-17 18:18:35 +01:00 |
|
hybpiper
|
|
|
|
hydra
|
|
|
|
hypre
|
[hypre] add the 'headers' property (#7278)
|
2018-03-22 19:43:23 -05:00 |
|
i3
|
|
|
|
ibmisc
|
|
|
|
iceauth
|
|
|
|
icedtea
|
Fix gtkplus build by hardcoding X11 support (#6971)
|
2018-01-23 15:24:20 -08:00 |
|
icet
|
|
|
|
ico
|
|
|
|
icu4c
|
|
|
|
id3lib
|
|
|
|
idba
|
|
|
|
igraph
|
|
|
|
igv
|
|
|
|
igvtools
|
new package: igvtools (#6974)
|
2018-02-15 16:27:46 -08:00 |
|
ilmbase
|
|
|
|
image-magick
|
|
|
|
imake
|
|
|
|
impute2
|
|
|
|
infernal
|
|
|
|
inputproto
|
|
|
|
intel
|
|
|
|
intel-daal
|
intel performance libraries: add 2018.2 (#7569)
|
2018-03-23 13:49:59 +01:00 |
|
intel-gpu-tools
|
|
|
|
intel-ipp
|
intel performance libraries: add 2018.2 (#7569)
|
2018-03-23 13:49:59 +01:00 |
|
intel-mkl
|
intel performance libraries: add 2018.2 (#7569)
|
2018-03-23 13:49:59 +01:00 |
|
intel-mkl-dnn
|
|
|
|
intel-mpi
|
intel performance libraries: add 2018.2 (#7569)
|
2018-03-23 13:49:59 +01:00 |
|
intel-parallel-studio
|
change recurse into recursive in a few places (#7342)
|
2018-02-28 20:15:26 +01:00 |
|
intel-tbb
|
add an option to build tbb statically (#7407)
|
2018-03-13 08:08:02 +01:00 |
|
intel-xed
|
intel-xed: new package (#7106)
|
2018-03-21 14:39:06 -05:00 |
|
intltool
|
|
|
|
ior
|
|
|
|
iozone
|
|
|
|
ipopt
|
ipopt: fix lmod global name 'prefix' undefined bug (#7224)
|
2018-02-14 08:40:47 +01:00 |
|
isaac
|
|
|
|
isaac-server
|
|
|
|
isl
|
Add latest version of ISL (#7547)
|
2018-03-22 21:09:43 +01:00 |
|
itstool
|
|
|
|
itsx
|
|
|
|
jags
|
package/JAGS: new version (4.3) (#7456)
|
2018-03-21 16:53:11 -05:00 |
|
jansson
|
|
|
|
jasper
|
|
|
|
jbigkit
|
|
|
|
jchronoss
|
New Package: jchronoss (#7207)
|
2018-03-21 16:56:20 -05:00 |
|
jdk
|
|
|
|
jellyfish
|
|
|
|
jemalloc
|
|
|
|
jmol
|
|
|
|
jq
|
|
|
|
json-c
|
json-c: Update to 0.13.1 (#7419)
|
2018-03-08 14:25:29 -08:00 |
|
json-cwx
|
|
|
|
json-glib
|
|
|
|
jsoncpp
|
|
|
|
judy
|
|
|
|
julia
|
|
|
|
kahip
|
|
|
|
kaks-calculator
|
|
|
|
kaldi
|
|
|
|
kallisto
|
|
|
|
kbproto
|
|
|
|
kdiff3
|
|
|
|
kealib
|
|
|
|
kentutils
|
|
|
|
kmergenie
|
|
|
|
kokkos
|
|
|
|
kraken
|
|
|
|
krims
|
|
|
|
kripke
|
|
|
|
kvasir-mpl
|
|
|
|
laghos
|
|
|
|
lammps
|
lammps: add version 20180222 (#7408)
|
2018-03-07 06:32:06 +01:00 |
|
last
|
|
|
|
latte
|
|
|
|
launchmon
|
|
|
|
lazyten
|
|
|
|
lbann
|
LBANN OS X (#7105)
|
2018-01-31 09:38:53 -08:00 |
|
lbxproxy
|
|
|
|
lcals
|
|
|
|
lcms
|
|
|
|
ldc
|
|
|
|
ldc-bootstrap
|
|
|
|
legion
|
|
|
|
leveldb
|
|
|
|
lftp
|
|
|
|
libaec
|
|
|
|
libaio
|
|
|
|
libapplewm
|
|
|
|
libarchive
|
libarchive@3.3.2: new version (#7113)
|
2018-01-31 13:39:58 +01:00 |
|
libassuan
|
|
|
|
libatomic-ops
|
|
|
|
libbeagle
|
|
|
|
libbsd
|
|
|
|
libbson
|
|
|
|
libcanberra
|
|
|
|
libcap
|
|
|
|
libcerf
|
|
|
|
libcheck
|
Fixed Theano GPU support (#7325)
|
2018-02-22 09:45:37 -08:00 |
|
libcint
|
|
|
|
libcircle
|
|
|
|
libconfig
|
|
|
|
libcroco
|
A new package: libcroco. (#7154)
|
2018-02-03 10:07:02 +01:00 |
|
libctl
|
|
|
|
libdivsufsort
|
|
|
|
libdmx
|
|
|
|
libdrm
|
|
|
|
libdwarf
|
libdwarf: fix linking, fix build on Darwin (#7124)
|
2018-01-31 16:12:25 -08:00 |
|
libedit
|
|
|
|
libelf
|
|
|
|
libemos
|
|
|
|
libepoxy
|
Xorg-server: Add dependencies and fix installation. (#7220)
|
2018-03-21 13:53:26 -05:00 |
|
libev
|
|
|
|
libevent
|
|
|
|
libevpath
|
|
|
|
libfabric
|
Added v1.4.2 to libfabric package (#7053)
|
2018-01-31 14:02:21 +01:00 |
|
libffi
|
|
|
|
libffs
|
|
|
|
libfontenc
|
|
|
|
libfs
|
|
|
|
libgcrypt
|
|
|
|
libgd
|
|
|
|
libgit2
|
|
|
|
libgpg-error
|
|
|
|
libgpuarray
|
Fixed Theano GPU support (#7325)
|
2018-02-22 09:45:37 -08:00 |
|
libgridxc
|
|
|
|
libgtextutils
|
|
|
|
libharu
|
|
|
|
libhio
|
|
|
|
libice
|
|
|
|
libiconv
|
|
|
|
libint
|
Opt avx (#7486)
|
2018-03-21 19:53:19 -05:00 |
|
libjpeg
|
Add latest version of libjpeg (#7517)
|
2018-03-19 10:41:17 -05:00 |
|
libjpeg-turbo
|
Add latest version of libjpeg-turbo (#7518)
|
2018-03-19 10:41:37 -05:00 |
|
libksba
|
|
|
|
liblbxutil
|
|
|
|
libmatheval
|
|
|
|
libmesh
|
|
|
|
libmng
|
|
|
|
libmongoc
|
|
|
|
libmonitor
|
|
|
|
libnbc
|
|
|
|
libogg
|
|
|
|
liboldx
|
|
|
|
libpcap
|
new package: tcptrace (#6993)
|
2018-03-09 10:46:57 -08:00 |
|
libpciaccess
|
|
|
|
libpfm4
|
|
|
|
libpipeline
|
|
|
|
libpng
|
Add latest version of libpng (#7516)
|
2018-03-19 10:40:56 -05:00 |
|
libpsl
|
|
|
|
libpthread-stubs
|
|
|
|
libquo
|
|
|
|
librom
|
librom: new package (#7180)
|
2018-03-21 14:16:36 -05:00 |
|
libsigsegv
|
|
|
|
libsm
|
|
|
|
libsodium
|
|
|
|
libspatialindex
|
|
|
|
libsplash
|
libSplash 1.7.0: Root Fix (#7368)
|
2018-03-06 09:38:40 +01:00 |
|
libssh2
|
|
|
|
libsvm
|
|
|
|
libszip
|
|
|
|
libtermkey
|
|
|
|
libtiff
|
|
|
|
libtool
|
libtool: symlink correctly on darwin (#7179)
|
2018-02-14 13:52:44 -08:00 |
|
libunistring
|
|
|
|
libunwind
|
|
|
|
libuuid
|
|
|
|
libuv
|
|
|
|
libvorbis
|
|
|
|
libvterm
|
|
|
|
libwebsockets
|
|
|
|
libwindowswm
|
|
|
|
libx11
|
|
|
|
libxau
|
|
|
|
libxaw
|
|
|
|
libxaw3d
|
|
|
|
libxc
|
Opt avx (#7486)
|
2018-03-21 19:53:19 -05:00 |
|
libxcb
|
|
|
|
libxcomposite
|
Fix GEANT4 and make more portable and flexible (#6956)
|
2018-01-23 10:13:08 +01:00 |
|
libxcursor
|
|
|
|
libxdamage
|
|
|
|
libxdmcp
|
|
|
|
libxevie
|
|
|
|
libxext
|
|
|
|
libxfixes
|
|
|
|
libxfont
|
|
|
|
libxfont2
|
|
|
|
libxfontcache
|
|
|
|
libxft
|
|
|
|
libxi
|
libXi requires pkgconfig and fixesproto (#7480)
|
2018-03-21 19:51:58 -05:00 |
|
libxinerama
|
|
|
|
libxkbcommon
|
|
|
|
libxkbfile
|
|
|
|
libxkbui
|
|
|
|
libxml2
|
|
|
|
libxmu
|
|
|
|
libxp
|
|
|
|
libxpm
|
|
|
|
libxpresent
|
|
|
|
libxprintapputil
|
|
|
|
libxprintutil
|
|
|
|
libxrandr
|
|
|
|
libxrender
|
|
|
|
libxres
|
|
|
|
libxscrnsaver
|
|
|
|
libxshmfence
|
|
|
|
libxslt
|
|
|
|
libxsmm
|
LIBXSMM 1.9 (#7495)
|
2018-03-17 18:29:17 -05:00 |
|
libxstream
|
|
|
|
libxt
|
|
|
|
libxtrap
|
|
|
|
libxtst
|
|
|
|
libxv
|
|
|
|
libxvmc
|
|
|
|
libxxf86dga
|
|
|
|
libxxf86misc
|
|
|
|
libxxf86vm
|
|
|
|
libyogrt
|
|
|
|
libzip
|
|
|
|
likwid
|
likwid: Fix build (#7244)
|
2018-03-06 18:07:37 +01:00 |
|
linkphase3
|
|
|
|
linux-headers
|
|
|
|
listres
|
|
|
|
llvm
|
llvm+python+lldb depends on py-six for versions 5 and up (#7056)
|
2018-03-22 15:42:41 -05:00 |
|
llvm-openmp-ompt
|
OpenSpeedShop package: add support for building on cray (#7338)
|
2018-03-07 14:26:07 -08:00 |
|
lmdb
|
|
|
|
lmod
|
|
|
|
lndir
|
|
|
|
log4cplus
|
A new package: log4cplus. (#7015)
|
2018-01-23 09:47:34 +01:00 |
|
log4cxx
|
Fix apr pick up of log4cxx (#7347)
|
2018-03-06 18:08:51 +01:00 |
|
lrslib
|
|
|
|
lrzip
|
|
|
|
lua
|
Fix bug in lua package instroduced by PR #7434 (#7450)
|
2018-03-09 16:57:46 -08:00 |
|
lua-bitlib
|
|
|
|
lua-jit
|
|
|
|
lua-lpeg
|
|
|
|
lua-luafilesystem
|
|
|
|
lua-luaposix
|
|
|
|
lua-mpack
|
|
|
|
luit
|
|
|
|
lulesh
|
|
|
|
lumpy-sv
|
|
|
|
lwgrp
|
|
|
|
lwm2
|
|
|
|
lz4
|
lz4 platform=darwin: fix dylib name (#7112)
|
2018-01-31 16:12:44 -08:00 |
|
lzma
|
|
|
|
lzo
|
|
|
|
m4
|
|
|
|
macsio
|
|
|
|
mad-numdiff
|
|
|
|
mafft
|
|
|
|
magics
|
|
|
|
magma
|
|
|
|
makedepend
|
|
|
|
mallocmc
|
|
|
|
man-db
|
|
|
|
maq
|
maq: Create new package. (#7133)
|
2018-01-31 13:12:43 +01:00 |
|
mariadb
|
|
|
|
masa
|
|
|
|
masurca
|
|
|
|
matio
|
|
|
|
matlab
|
|
|
|
maven
|
|
|
|
maverick
|
|
|
|
mawk
|
|
|
|
mbedtls
|
|
|
|
mc
|
mc: create new package (#7564)
|
2018-03-22 19:48:48 -05:00 |
|
mcl
|
|
|
|
mdtest
|
|
|
|
meep
|
|
|
|
mefit
|
|
|
|
memaxes
|
|
|
|
meme
|
meme: fix errors (#6736)
|
2018-03-22 12:06:24 -05:00 |
|
meraculous
|
|
|
|
mercurial
|
|
|
|
mesa
|
Xorg-server: Add dependencies and fix installation. (#7220)
|
2018-03-21 13:53:26 -05:00 |
|
mesa-glu
|
|
|
|
meshkit
|
|
|
|
meson
|
|
|
|
mesquite
|
|
|
|
metaphysicl
|
|
|
|
metasv
|
|
|
|
metis
|
Fix for building METIS 4.0.3 with '~shared'. (#7202)
|
2018-02-13 02:22:25 -08:00 |
|
mfem
|
mfem: have hypre link line also link lapack+blas (#7165)
|
2018-02-15 14:59:07 +01:00 |
|
microbiomeutil
|
|
|
|
minced
|
|
|
|
miniaero
|
|
|
|
miniamr
|
|
|
|
miniconda2
|
|
|
|
miniconda3
|
|
|
|
minife
|
|
|
|
minighost
|
minighost: rework link logic (#7402)
|
2018-03-06 15:51:12 -07:00 |
|
minigmg
|
|
|
|
minimap2
|
|
|
|
minimd
|
|
|
|
miniqmc
|
|
|
|
minisign
|
|
|
|
minismac2d
|
minismac2d: fix build with external Debian MPI (#7318)
|
2018-03-05 16:07:41 -07:00 |
|
minitri
|
|
|
|
minixyce
|
|
|
|
mira
|
|
|
|
mirdeep
|
|
|
|
mitofates
|
|
|
|
mitos
|
|
|
|
mkfontdir
|
|
|
|
mkfontscale
|
|
|
|
mlhka
|
|
|
|
moab
|
|
|
|
modern-wheel
|
modern-wheel: new package (#7514)
|
2018-03-19 10:43:22 -05:00 |
|
molcas
|
|
|
|
mono
|
|
|
|
mosh
|
mosh build depends on pkg-config (#7365)
|
2018-03-06 09:34:00 +01:00 |
|
mothur
|
|
|
|
motif
|
Fix GEANT4 and make more portable and flexible (#6956)
|
2018-01-23 10:13:08 +01:00 |
|
motioncor2
|
|
|
|
mozjs
|
|
|
|
mpark-variant
|
MPark.Variant (#7251)
|
2018-02-27 13:15:59 +01:00 |
|
mpc
|
Add latest version of MPC (#7546)
|
2018-03-22 21:10:58 +01:00 |
|
mpe2
|
|
|
|
mpest
|
|
|
|
mpfr
|
Add latest version of MPFR and patches for older versions (#7545)
|
2018-03-22 19:37:01 -05:00 |
|
mpibash
|
|
|
|
mpiblast
|
|
|
|
mpich
|
mpich@develop: needs git submodules (#7357)
|
2018-02-28 19:48:57 -06:00 |
|
mpifileutils
|
|
|
|
mpileaks
|
|
|
|
mpip
|
|
|
|
mpir
|
|
|
|
mpix-launch-swift
|
|
|
|
mrbayes
|
|
|
|
mrnet
|
OpenSpeedShop package: add support for building on cray (#7338)
|
2018-03-07 14:26:07 -08:00 |
|
mrtrix3
|
|
|
|
mscgen
|
Provide new package: mscgen. (#7477)
|
2018-03-14 06:56:11 +01:00 |
|
msgpack-c
|
|
|
|
mshadow
|
|
|
|
multitail
|
|
|
|
multiverso
|
|
|
|
mummer
|
|
|
|
mumps
|
mumps: add the libs property (#7264)
|
2018-03-06 18:05:58 +01:00 |
|
munge
|
|
|
|
muparser
|
|
|
|
muscle
|
|
|
|
muse
|
|
|
|
muster
|
|
|
|
mvapich2
|
filter_compiler_path: added the possibility to narrow search path
|
2018-02-13 02:18:28 -08:00 |
|
mxml
|
|
|
|
mxnet
|
|
|
|
nag
|
|
|
|
nalu
|
nalu package: update dependency (#7245)
|
2018-02-22 14:14:39 -08:00 |
|
namd
|
|
|
|
nano
|
|
|
|
nanoflann
|
|
|
|
nasm
|
Add latest version of nasm (#7515)
|
2018-03-19 08:50:02 -05:00 |
|
nauty
|
|
|
|
ncbi-rmblastn
|
|
|
|
nccl
|
|
|
|
nccmp
|
|
|
|
ncdu
|
|
|
|
ncftp
|
|
|
|
ncl
|
|
|
|
nco
|
|
|
|
ncurses
|
Changed keyword argument 'recurse' to 'recursive'
|
2018-02-13 02:18:28 -08:00 |
|
ncview
|
|
|
|
ndiff
|
|
|
|
nek5000
|
Update Nek5000 package to Version 17 (#7178)
|
2018-02-03 17:05:14 -06:00 |
|
nekbone
|
|
|
|
nekcem
|
|
|
|
neovim
|
|
|
|
netcdf
|
|
|
|
netcdf-cxx
|
change recurse into recursive in a few places (#7342)
|
2018-02-28 20:15:26 +01:00 |
|
netcdf-cxx4
|
change recurse into recursive in a few places (#7342)
|
2018-02-28 20:15:26 +01:00 |
|
netcdf-fortran
|
Changed keyword argument 'recurse' to 'recursive'
|
2018-02-13 02:18:28 -08:00 |
|
netgauge
|
|
|
|
netgen
|
|
|
|
netlib-lapack
|
Ghost as cuda package (#7501)
|
2018-03-20 11:23:45 -05:00 |
|
netlib-scalapack
|
netlib-scalapack: add the libs property (#7265)
|
2018-02-18 10:19:03 +01:00 |
|
netlib-xblas
|
change recurse into recursive in a few places (#7342)
|
2018-02-28 20:15:26 +01:00 |
|
nettle
|
|
|
|
neuron
|
Make neuron package more generic (#7393)
|
2018-03-06 16:31:28 +01:00 |
|
nextflow
|
|
|
|
nfft
|
|
|
|
nghttp2
|
|
|
|
nginx
|
|
|
|
ngmlr
|
|
|
|
ninja
|
|
|
|
ninja-fortran
|
|
|
|
nlopt
|
|
|
|
nmap
|
|
|
|
nnvm
|
|
|
|
node-js
|
|
|
|
notmuch
|
|
|
|
npb
|
|
|
|
npm
|
|
|
|
npth
|
|
|
|
nspr
|
|
|
|
numactl
|
|
|
|
numdiff
|
|
|
|
nut
|
nut: needs cmake-3.0 (#7298)
|
2018-02-21 09:10:14 -08:00 |
|
nwchem
|
Used names with __ in class level constructs to avoid rebinding (#7563)
|
2018-03-22 15:41:55 -05:00 |
|
ocaml
|
ocaml@4.06.0: new version (#7078)
|
2018-01-31 13:49:17 +01:00 |
|
oce
|
|
|
|
oclint
|
oclint: new package (#7076)
|
2018-02-06 06:35:17 +01:00 |
|
oclock
|
|
|
|
octave
|
|
|
|
octave-optim
|
|
|
|
octave-splines
|
|
|
|
octave-struct
|
|
|
|
octopus
|
|
|
|
of-adios-write
|
|
|
|
ompss
|
|
|
|
ompt-openmp
|
|
|
|
oniguruma
|
|
|
|
ont-albacore
|
|
|
|
opa-psm2
|
|
|
|
opam
|
opam: new package (#7079)
|
2018-01-31 13:44:09 +01:00 |
|
opari2
|
|
|
|
openbabel
|
|
|
|
openblas
|
|
|
|
opencoarrays
|
|
|
|
opencv
|
change recurse into recursive in a few places (#7342)
|
2018-02-28 20:15:26 +01:00 |
|
openexr
|
|
|
|
openfast
|
|
|
|
openfoam-com
|
|
|
|
openfoam-org
|
|
|
|
openfst
|
|
|
|
opengl
|
Update gl/qt options for vtk package (#6551)
|
2018-01-22 10:46:44 -08:00 |
|
openjpeg
|
|
|
|
openmc
|
|
|
|
openmpi
|
Open MPI: add 2.1.3 (#7535)
|
2018-03-21 16:49:31 -05:00 |
|
opennurbs
|
|
|
|
openscenegraph
|
|
|
|
openspeedshop
|
OpenSpeedShop package: add support for building on cray (#7338)
|
2018-03-07 14:26:07 -08:00 |
|
openssh
|
|
|
|
openssl
|
|
|
|
opium
|
|
|
|
opus
|
|
|
|
orfm
|
orfm: needs zlib (#7466)
|
2018-03-21 12:55:47 -05:00 |
|
orthofinder
|
orthofinder: Create new package. (#7364)
|
2018-03-07 20:45:45 +01:00 |
|
orthomcl
|
|
|
|
osu-micro-benchmarks
|
Added osu-micro-benchmarks@5.4 (#7149)
|
2018-01-31 16:10:14 -08:00 |
|
otf
|
|
|
|
otf2
|
|
|
|
p4est
|
|
|
|
p7zip
|
|
|
|
pacbio-daligner
|
|
|
|
pacbio-damasker
|
|
|
|
pacbio-dazz-db
|
|
|
|
pacbio-dextractor
|
|
|
|
pagit
|
|
|
|
pagmo
|
|
|
|
paml
|
|
|
|
panda
|
|
|
|
pandaseq
|
pandaseq: needs bzip and libtool as link (#7465)
|
2018-03-21 16:52:46 -05:00 |
|
pango
|
|
|
|
papi
|
|
|
|
paradiseo
|
|
|
|
parallel
|
|
|
|
parallel-netcdf
|
|
|
|
paraver
|
|
|
|
paraview
|
|
|
|
parmetis
|
|
|
|
parmgridgen
|
|
|
|
parsimonator
|
|
|
|
parsplice
|
|
|
|
partitionfinder
|
|
|
|
patch
|
Add latest version of patch (#7539)
|
2018-03-21 08:16:41 -05:00 |
|
patchelf
|
|
|
|
pathfinder
|
|
|
|
pax-utils
|
|
|
|
pbmpi
|
|
|
|
pcma
|
|
|
|
pcre
|
|
|
|
pcre2
|
|
|
|
pdsh
|
|
|
|
pdt
|
|
|
|
pegtl
|
|
|
|
pennant
|
|
|
|
percept
|
|
|
|
perl
|
|
|
|
perl-algorithm-diff
|
|
|
|
perl-app-cmd
|
|
|
|
perl-array-utils
|
|
|
|
perl-b-hooks-endofscope
|
|
|
|
perl-bio-perl
|
|
|
|
perl-bit-vector
|
|
|
|
perl-cairo
|
perl-cairo: Create new package (#7432)
|
2018-03-21 16:54:25 -05:00 |
|
perl-capture-tiny
|
|
|
|
perl-carp-clan
|
|
|
|
perl-class-data-inheritable
|
|
|
|
perl-class-inspector
|
|
|
|
perl-class-load
|
|
|
|
perl-class-load-xs
|
|
|
|
perl-cpan-meta-check
|
|
|
|
perl-data-optlist
|
|
|
|
perl-data-stag
|
|
|
|
perl-dbd-mysql
|
|
|
|
perl-dbfile
|
|
|
|
perl-dbi
|
|
|
|
perl-devel-cycle
|
|
|
|
perl-devel-globaldestruction
|
|
|
|
perl-devel-overloadinfo
|
|
|
|
perl-devel-stacktrace
|
|
|
|
perl-digest-md5
|
|
|
|
perl-dist-checkconflicts
|
|
|
|
perl-encode-locale
|
|
|
|
perl-eval-closure
|
|
|
|
perl-exception-class
|
|
|
|
perl-exporter-tiny
|
new package: perl-exporter-tiny (#7030)
|
2018-02-02 10:28:45 -08:00 |
|
perl-extutils-depends
|
perl-extutils-depends: Create new package (#7376)
|
2018-03-05 21:32:22 +01:00 |
|
perl-extutils-makemaker
|
|
|
|
perl-extutils-pkgconfig
|
|
|
|
perl-file-copy-recursive
|
|
|
|
perl-file-listing
|
|
|
|
perl-file-pushd
|
|
|
|
perl-file-sharedir-install
|
|
|
|
perl-file-slurp-tiny
|
|
|
|
perl-file-slurper
|
perl-file-slurper: Create new package (#7378)
|
2018-03-06 09:28:37 +01:00 |
|
perl-file-which
|
|
|
|
perl-font-ttf
|
|
|
|
perl-gd
|
|
|
|
perl-gd-graph
|
|
|
|
perl-gd-text
|
|
|
|
perl-graph
|
perl-graph: Create new package (#7022)
|
2018-01-22 07:10:58 +01:00 |
|
perl-graph-readwrite
|
perl-graph-readwrite: Create new package (#7284)
|
2018-03-06 18:12:06 +01:00 |
|
perl-html-parser
|
|
|
|
perl-html-tagset
|
|
|
|
perl-http-cookies
|
|
|
|
perl-http-daemon
|
|
|
|
perl-http-date
|
|
|
|
perl-http-message
|
|
|
|
perl-http-negotiate
|
|
|
|
perl-inline
|
|
|
|
perl-inline-c
|
|
|
|
perl-intervaltree
|
|
|
|
perl-io-html
|
|
|
|
perl-io-sessiondata
|
|
|
|
perl-io-socket-ssl
|
|
|
|
perl-io-string
|
|
|
|
perl-json
|
perl-json: Create new package (#7431)
|
2018-03-22 19:41:50 -05:00 |
|
perl-list-moreutils
|
|
|
|
perl-log-log4perl
|
|
|
|
perl-lwp
|
|
|
|
perl-lwp-mediatypes
|
|
|
|
perl-lwp-protocol-https
|
|
|
|
perl-math-cdf
|
|
|
|
perl-module-build
|
|
|
|
perl-module-implementation
|
perl-module-implementation: Create new package (#7549)
|
2018-03-21 17:16:24 -05:00 |
|
perl-module-runtime
|
new package: perl-module-runtime (#7494)
|
2018-03-21 10:35:28 -07:00 |
|
perl-module-runtime-conflicts
|
|
|
|
perl-moose
|
|
|
|
perl-mozilla-ca
|
|
|
|
perl-mro-compat
|
|
|
|
perl-namespace-clean
|
|
|
|
perl-net-http
|
|
|
|
perl-net-scp-expect
|
perl-net-scp-expect: Create new package (#7028)
|
2018-03-06 18:39:13 +01:00 |
|
perl-net-ssleay
|
|
|
|
perl-package-deprecationmanager
|
|
|
|
perl-package-stash
|
|
|
|
perl-package-stash-xs
|
|
|
|
perl-padwalker
|
|
|
|
perl-parallel-forkmanager
|
new package: perl-parallel-forkmanager (#7049)
|
2018-03-01 12:37:16 -08:00 |
|
perl-params-util
|
|
|
|
perl-parse-recdescent
|
|
|
|
perl-pdf-api2
|
|
|
|
perl-pegex
|
|
|
|
perl-perlio-gzip
|
|
|
|
perl-soap-lite
|
|
|
|
perl-star-fusion
|
|
|
|
perl-statistics-descriptive
|
|
|
|
perl-sub-exporter
|
|
|
|
perl-sub-exporter-progressive
|
|
|
|
perl-sub-identify
|
|
|
|
perl-sub-install
|
|
|
|
perl-sub-name
|
|
|
|
perl-sub-uplevel
|
|
|
|
perl-svg
|
|
|
|
perl-swissknife
|
|
|
|
perl-task-weaken
|
|
|
|
perl-term-readkey
|
|
|
|
perl-test-cleannamespaces
|
|
|
|
perl-test-deep
|
|
|
|
perl-test-differences
|
|
|
|
perl-test-exception
|
|
|
|
perl-test-fatal
|
|
|
|
perl-test-memory-cycle
|
|
|
|
perl-test-most
|
|
|
|
perl-test-needs
|
|
|
|
perl-test-requires
|
|
|
|
perl-test-requiresinternet
|
|
|
|
perl-test-warn
|
|
|
|
perl-test-warnings
|
|
|
|
perl-text-csv
|
perl-text-csv: Create new package (#7258)
|
2018-02-19 22:13:50 -08:00 |
|
perl-text-diff
|
|
|
|
perl-text-unidecode
|
|
|
|
perl-time-hires
|
|
|
|
perl-time-piece
|
|
|
|
perl-try-tiny
|
|
|
|
perl-uri
|
|
|
|
perl-uri-escape
|
|
|
|
perl-version
|
|
|
|
perl-www-robotrules
|
|
|
|
perl-xml-libxml
|
|
|
|
perl-xml-parser
|
|
|
|
perl-xml-parser-lite
|
|
|
|
perl-xml-simple
|
|
|
|
perl-yaml-libyaml
|
|
|
|
petsc
|
petsc: use spack-built python for configure (#7176)
|
2018-02-09 13:11:03 -08:00 |
|
pexsi
|
|
|
|
pfft
|
|
|
|
pflotran
|
|
|
|
pfunit
|
|
|
|
pgdspider
|
|
|
|
pgi
|
|
|
|
phantompeakqualtools
|
|
|
|
phasta
|
|
|
|
phist
|
added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361)
|
2018-03-22 19:42:38 -05:00 |
|
phylip
|
snphylo: new package (#7045)
|
2018-03-21 16:21:55 -05:00 |
|
picard
|
picard: Add version 2.18.0 (#7528)
|
2018-03-19 16:21:04 -05:00 |
|
pidx
|
|
|
|
pigz
|
|
|
|
pilon
|
new package: pilon (#7033)
|
2018-02-15 16:23:59 -08:00 |
|
piranha
|
|
|
|
pixman
|
|
|
|
pkg-config
|
remove cray-specific path modifications from pkgconfig providers (now handled in cray platform) (#7406)
|
2018-03-21 13:20:40 -05:00 |
|
pkgconf
|
remove cray-specific path modifications from pkgconfig providers (now handled in cray platform) (#7406)
|
2018-03-21 13:20:40 -05:00 |
|
planck-likelihood
|
|
|
|
plasma
|
|
|
|
plink
|
|
|
|
plumed
|
|
|
|
pmgr-collective
|
|
|
|
pmix
|
pmix: add 2.1.0 and more (#7191)
|
2018-02-14 16:26:49 -08:00 |
|
pnfft
|
|
|
|
pngwriter
|
PNGwriter: 0.7.0 (#7026)
|
2018-01-31 14:34:52 +01:00 |
|
pnmpi
|
pnmpi@1.7: new package (#7051)
|
2018-03-06 18:48:28 +01:00 |
|
poamsa
|
|
|
|
pocl
|
pocl: fix spec (#7461)
|
2018-03-19 16:44:01 -05:00 |
|
polymake
|
|
|
|
porta
|
|
|
|
portage
|
|
|
|
postgresql
|
postgresql: add newest version 10.3 (#7455)
|
2018-03-14 08:54:02 +01:00 |
|
ppl
|
|
|
|
prank
|
Added compiler conflict to prank (#7168)
|
2018-03-08 08:47:46 +01:00 |
|
presentproto
|
|
|
|
preseq
|
|
|
|
price
|
|
|
|
primer3
|
|
|
|
printproto
|
|
|
|
probconsrna
|
|
|
|
prodigal
|
|
|
|
proj
|
|
|
|
protobuf
|
Protobuf fix (#7110)
|
2018-01-31 09:39:53 -08:00 |
|
proxymngr
|
|
|
|
pruners-ninja
|
|
|
|
ps-lite
|
|
|
|
psi4
|
|
|
|
pstreams
|
|
|
|
pugixml
|
|
|
|
pumi
|
|
|
|
pvm
|
|
|
|
py-3to2
|
|
|
|
py-4suite-xml
|
|
|
|
py-abipy
|
|
|
|
py-adios
|
|
|
|
py-affine
|
py-rasterio: Added with dependencies. (#7156)
|
2018-03-06 18:21:34 +01:00 |
|
py-alabaster
|
|
|
|
py-apache-libcloud
|
|
|
|
py-apipkg
|
|
|
|
py-appdirs
|
|
|
|
py-appnope
|
|
|
|
py-apscheduler
|
|
|
|
py-argcomplete
|
|
|
|
py-argparse
|
|
|
|
py-ase
|
py-gpaw package with variants for MPI, FFTW and ScaLAPACK (#7373)
|
2018-03-07 09:30:47 +01:00 |
|
py-asn1crypto
|
|
|
|
py-astroid
|
|
|
|
py-astropy
|
|
|
|
py-attrs
|
|
|
|
py-autopep8
|
|
|
|
py-babel
|
|
|
|
py-backports-abc
|
|
|
|
py-backports-functools-lru-cache
|
py-backports-functools-lru-cache: add version 1.5 (#7206)
|
2018-03-21 14:09:55 -05:00 |
|
py-backports-shutil-get-terminal-size
|
|
|
|
py-backports-ssl-match-hostname
|
|
|
|
py-basemap
|
make py-setuptools a run-time-only dep for py-basemap and patch pytho… (#6989)
|
2018-03-21 16:34:27 -05:00 |
|
py-bcbio-gff
|
new package: py-bcbio-gff (#7129)
|
2018-03-09 10:14:53 -08:00 |
|
py-beautifulsoup4
|
|
|
|
py-binwalk
|
|
|
|
py-biom-format
|
|
|
|
py-biopython
|
|
|
|
py-bitarray
|
Efficient array of booleans, C extension (#7135)
|
2018-02-01 18:48:32 +00:00 |
|
py-bitstring
|
py-bitstring: Create new package (#7190)
|
2018-03-06 13:04:16 +01:00 |
|
py-bleach
|
|
|
|
py-blessings
|
|
|
|
py-bokeh
|
|
|
|
py-boltons
|
|
|
|
py-bottleneck
|
|
|
|
py-brian
|
|
|
|
py-brian2
|
|
|
|
py-bsddb3
|
Fix version-specific URLs for Python packages (#7394)
|
2018-03-05 12:00:49 -08:00 |
|
py-bx-python
|
|
|
|
py-cclib
|
|
|
|
py-cdat-lite
|
|
|
|
py-cdo
|
|
|
|
py-certifi
|
|
|
|
py-cffi
|
|
|
|
py-chardet
|
|
|
|
py-checkm-genome
|
py-checkm-genome: Create new package (#7200)
|
2018-02-09 19:37:16 +01:00 |
|
py-click
|
|
|
|
py-cligj
|
py-rasterio: Added with dependencies. (#7156)
|
2018-03-06 18:21:34 +01:00 |
|
py-cogent
|
|
|
|
py-colorama
|
|
|
|
py-colormath
|
|
|
|
py-configparser
|
|
|
|
py-counter
|
|
|
|
py-coverage
|
|
|
|
py-cpuinfo
|
|
|
|
py-crossmap
|
py-crossmap: adding new package (#7108)
|
2018-03-06 18:27:03 +01:00 |
|
py-cryptography
|
|
|
|
py-csvkit
|
|
|
|
py-current
|
|
|
|
py-cutadapt
|
|
|
|
py-cvxopt
|
Add py-cvxopt package (#7527)
|
2018-03-22 19:38:46 -05:00 |
|
py-cycler
|
|
|
|
py-cython
|
|
|
|
py-dask
|
|
|
|
py-dateutil
|
|
|
|
py-dbf
|
|
|
|
py-decorator
|
|
|
|
py-deeptools
|
|
|
|
py-dendropy
|
|
|
|
py-dev
|
|
|
|
py-dill
|
|
|
|
py-dlcpar
|
|
|
|
py-docutils
|
|
|
|
py-doxypy
|
|
|
|
py-doxypypy
|
|
|
|
py-dryscrape
|
|
|
|
py-dxchange
|
|
|
|
py-dxfile
|
|
|
|
py-easybuild-easyblocks
|
|
|
|
py-easybuild-easyconfigs
|
|
|
|
py-easybuild-framework
|
|
|
|
py-edffile
|
|
|
|
py-editdistance
|
|
|
|
py-elasticsearch
|
|
|
|
py-elephant
|
|
|
|
py-emcee
|
|
|
|
py-entrypoints
|
|
|
|
py-enum34
|
|
|
|
py-epydoc
|
|
|
|
py-espresso
|
|
|
|
py-espressopp
|
|
|
|
py-et-xmlfile
|
|
|
|
py-execnet
|
|
|
|
py-fastaindex
|
|
|
|
py-fasteners
|
|
|
|
py-faststructure
|
|
|
|
py-fiscalyear
|
|
|
|
py-flake8
|
|
|
|
py-flask
|
|
|
|
py-flexx
|
|
|
|
py-fparser
|
|
|
|
py-funcsigs
|
|
|
|
py-functools32
|
|
|
|
py-future
|
|
|
|
py-futures
|
|
|
|
py-genders
|
|
|
|
py-genshi
|
|
|
|
py-git2
|
|
|
|
py-git-review
|
|
|
|
py-gnuplot
|
|
|
|
py-goatools
|
new package: py-goatools (#7328)
|
2018-02-28 17:41:22 -08:00 |
|
py-gpaw
|
py-gpaw package with variants for MPI, FFTW and ScaLAPACK (#7373)
|
2018-03-07 09:30:47 +01:00 |
|
py-griddataformats
|
|
|
|
py-guidata
|
|
|
|
py-guiqwt
|
|
|
|
py-h5py
|
|
|
|
py-html2text
|
|
|
|
py-html5lib
|
|
|
|
py-htseq
|
|
|
|
py-httpbin
|
|
|
|
py-hypothesis
|
|
|
|
py-idna
|
|
|
|
py-igraph
|
|
|
|
py-imagesize
|
|
|
|
py-iminuit
|
|
|
|
py-importlib
|
|
|
|
py-ipaddress
|
|
|
|
py-ipdb
|
|
|
|
py-ipykernel
|
|
|
|
py-ipython
|
|
|
|
py-ipython-genutils
|
|
|
|
py-ipywidgets
|
|
|
|
py-isort
|
|
|
|
py-itsdangerous
|
|
|
|
py-jdcal
|
|
|
|
py-jedi
|
|
|
|
py-jinja2
|
|
|
|
py-joblib
|
|
|
|
py-jpype
|
|
|
|
py-jsonschema
|
|
|
|
py-junit-xml
|
|
|
|
py-jupyter-client
|
|
|
|
py-jupyter-console
|
|
|
|
py-jupyter-core
|
|
|
|
py-jupyter-notebook
|
|
|
|
py-keras
|
|
|
|
py-latexcodec
|
|
|
|
py-lazy
|
|
|
|
py-lazy-object-proxy
|
|
|
|
py-lazyarray
|
|
|
|
py-libconf
|
|
|
|
py-libensemble
|
|
|
|
py-line-profiler
|
|
|
|
py-linecache2
|
|
|
|
py-lit
|
|
|
|
py-llvmlite
|
|
|
|
py-lmfit
|
|
|
|
py-localcider
|
py-localcider: Create new package (#7189)
|
2018-02-06 13:52:37 +01:00 |
|
py-lockfile
|
|
|
|
py-logilab-common
|
|
|
|
py-lrudict
|
|
|
|
py-lxml
|
|
|
|
py-lzstring
|
|
|
|
py-macholib
|
|
|
|
py-machotools
|
|
|
|
py-macs2
|
|
|
|
py-maestrowf
|
maestrowf: new package (#7300)
|
2018-02-22 16:01:18 -08:00 |
|
py-mako
|
|
|
|
py-mappy
|
|
|
|
py-markdown
|
|
|
|
py-markupsafe
|
|
|
|
py-matplotlib
|
|
|
|
py-mccabe
|
|
|
|
py-mdanalysis
|
|
|
|
py-meep
|
|
|
|
py-memory-profiler
|
|
|
|
py-methylcode
|
|
|
|
py-misopy
|
|
|
|
py-mistune
|
|
|
|
py-mock
|
|
|
|
py-moltemplate
|
|
|
|
py-mongo
|
|
|
|
py-monotonic
|
|
|
|
py-monty
|
|
|
|
py-mpi4py
|
|
|
|
py-mpmath
|
|
|
|
py-multiprocess
|
|
|
|
py-multiqc
|
py-multiqc: Add version 1.5 (#7506)
|
2018-03-17 18:22:12 -05:00 |
|
py-mx
|
|
|
|
py-mxnet
|
|
|
|
py-myhdl
|
|
|
|
py-mysqldb1
|
|
|
|
py-nbconvert
|
|
|
|
py-nbformat
|
|
|
|
py-neo
|
|
|
|
py-nestle
|
|
|
|
py-netcdf4
|
|
|
|
py-netifaces
|
|
|
|
py-networkx
|
|
|
|
py-nose
|
|
|
|
py-nosexcover
|
|
|
|
py-numba
|
|
|
|
py-numexpr
|
|
|
|
py-numpy
|
|
|
|
py-numpydoc
|
|
|
|
py-olefile
|
|
|
|
py-ont-fast5-api
|
|
|
|
py-openpmd-validator
|
openPMD-validator (#7064)
|
2018-01-31 13:59:38 +01:00 |
|
py-openpyxl
|
|
|
|
py-ordereddict
|
|
|
|
py-oset
|
|
|
|
py-packaging
|
Add latest version of py-packaging (#7522)
|
2018-03-19 16:19:05 -05:00 |
|
py-palettable
|
|
|
|
py-pandas
|
|
|
|
py-paramiko
|
|
|
|
py-pathlib2
|
|
|
|
py-pathos
|
|
|
|
py-pathspec
|
|
|
|
py-patsy
|
|
|
|
py-pbr
|
Added virtualenvwrapper python package (#7270)
|
2018-02-22 09:47:05 -08:00 |
|
py-perf
|
py-performance: added package (#7500)
|
2018-03-17 20:33:13 +01:00 |
|
py-performance
|
py-performance: added package (#7500)
|
2018-03-17 20:33:13 +01:00 |
|
py-periodictable
|
|
|
|
py-petsc4py
|
|
|
|
py-pexpect
|
|
|
|
py-phonopy
|
|
|
|
py-pickleshare
|
|
|
|
py-pil
|
|
|
|
py-pillow
|
|
|
|
py-pip
|
|
|
|
py-pipits
|
|
|
|
py-pkgconfig
|
|
|
|
py-plotly
|
|
|
|
py-ply
|
|
|
|
py-pmw
|
|
|
|
py-pox
|
|
|
|
py-ppft
|
|
|
|
py-prettytable
|
|
|
|
py-proj
|
|
|
|
py-prompt-toolkit
|
|
|
|
py-protobuf
|
|
|
|
py-psutil
|
|
|
|
py-psyclone
|
|
|
|
py-ptyprocess
|
|
|
|
py-pudb
|
|
|
|
py-py
|
|
|
|
py-py2bit
|
|
|
|
py-py2cairo
|
|
|
|
py-py2neo
|
|
|
|
py-py4j
|
|
|
|
py-pyani
|
|
|
|
py-pyasn1
|
|
|
|
py-pybedtools
|
py-pybedtools: fix hash for 0.6.9 (#7492)
|
2018-03-21 19:51:34 -05:00 |
|
py-pybigwig
|
|
|
|
py-pybind11
|
pybind11: 2.2.[1,2] & develop (#7216)
|
2018-02-11 18:00:22 +01:00 |
|
py-pybtex
|
|
|
|
py-pybtex-docutils
|
|
|
|
py-pychecker
|
|
|
|
py-pycodestyle
|
|
|
|
py-pycparser
|
|
|
|
py-pycrypto
|
|
|
|
py-pycurl
|
|
|
|
py-pydatalog
|
|
|
|
py-pydispatcher
|
|
|
|
py-pydot
|
|
|
|
py-pyelftools
|
|
|
|
py-pyfasta
|
Fix version-specific URLs for Python packages (#7394)
|
2018-03-05 12:00:49 -08:00 |
|
py-pyfftw
|
|
|
|
py-pyflakes
|
|
|
|
py-pygments
|
|
|
|
py-pygobject
|
py-py{gobject,gtk} require pkgconfig for build (#7380)
|
2018-03-21 13:22:08 -05:00 |
|
py-pygpu
|
Fixed Theano GPU support (#7325)
|
2018-02-22 09:45:37 -08:00 |
|
py-pygtk
|
py-py{gobject,gtk} require pkgconfig for build (#7380)
|
2018-03-21 13:22:08 -05:00 |
|
py-pylint
|
|
|
|
py-pymatgen
|
|
|
|
py-pyminifier
|
|
|
|
py-pympler
|
|
|
|
py-pynn
|
|
|
|
py-pypar
|
|
|
|
py-pyparsing
|
|
|
|
py-pypeflow
|
|
|
|
py-pyprof2html
|
|
|
|
py-pyqt
|
|
|
|
py-pyrad
|
|
|
|
py-pysam
|
|
|
|
py-pyscaf
|
|
|
|
py-pyserial
|
|
|
|
py-pyside
|
|
|
|
py-pysocks
|
|
|
|
py-pytables
|
|
|
|
py-pytest
|
|
|
|
py-pytest-cov
|
|
|
|
py-pytest-flake8
|
|
|
|
py-pytest-httpbin
|
|
|
|
py-pytest-mock
|
|
|
|
py-pytest-runner
|
|
|
|
py-pytest-xdist
|
|
|
|
py-python-daemon
|
|
|
|
py-python-gitlab
|
|
|
|
py-python-levenshtein
|
py-python-levenshtein: Create new package (#7426)
|
2018-03-21 16:54:51 -05:00 |
|
py-pythonqwt
|
|
|
|
py-pytz
|
|
|
|
py-pyutilib
|
package/py-pyutilib: create new package (#7555)
|
2018-03-22 21:49:07 +01:00 |
|
py-pyvcf
|
py-pyvcf: versions 0.6.7 and 0.6.8 (#6743)
|
2018-02-20 17:14:06 -06:00 |
|
py-pywavelets
|
|
|
|
py-pyyaml
|
|
|
|
py-qtawesome
|
|
|
|
py-qtconsole
|
make py-setuptools a run-time-only dep for py-basemap and patch pytho… (#6989)
|
2018-03-21 16:34:27 -05:00 |
|
py-qtpy
|
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|
py-quantities
|
|
|
|
py-quast
|
py-quast: Create new package (#7254)
|
2018-02-18 14:33:59 +01:00 |
|
py-radical-utils
|
|
|
|
py-ranger
|
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|
py-rasterio
|
py-rasterio: Added with dependencies. (#7156)
|
2018-03-06 18:21:34 +01:00 |
|
py-readme-renderer
|
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py-regex
|
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py-reportlab
|
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py-requests
|
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py-restview
|
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py-rope
|
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py-rpy2
|
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py-rsa
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py-rseqc
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py-rtree
|
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py-saga-python
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py-scandir
|
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py-scientificpython
|
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py-scikit-image
|
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py-scikit-learn
|
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py-scipy
|
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py-seaborn
|
|
|
|
py-setuptools
|
Add latest version of py-setuptools (#7523)
|
2018-03-20 07:18:20 +01:00 |
|
py-setuptools-git
|
py-setuptools-git: Create new package (#7131)
|
2018-01-31 16:52:34 +01:00 |
|
py-setuptools-scm
|
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py-sfepy
|
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py-sh
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py-shiboken
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py-simplegeneric
|
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py-simplejson
|
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py-singledispatch
|
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py-sip
|
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|
py-six
|
Add latest version of py-six (#7524)
|
2018-03-19 16:19:19 -05:00 |
|
py-slepc4py
|
|
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|
py-sncosmo
|
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py-snowballstemmer
|
|
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|
py-snuggs
|
py-rasterio: Added with dependencies. (#7156)
|
2018-03-06 18:21:34 +01:00 |
|
py-spectra
|
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py-spefile
|
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py-spglib
|
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py-sphinx
|
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py-sphinx-bootstrap-theme
|
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py-sphinx-rtd-theme
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py-sphinxcontrib-bibtex
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py-sphinxcontrib-programoutput
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py-sphinxcontrib-websupport
|
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py-spyder
|
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py-spykeutils
|
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py-sqlalchemy
|
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|
py-statsmodels
|
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|
py-stevedore
|
Added virtualenvwrapper python package (#7270)
|
2018-02-22 09:47:05 -08:00 |
|
py-storm
|
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py-subprocess32
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py-symengine
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py-symfit
|
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py-sympy
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py-tabulate
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py-tappy
|
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py-terminado
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py-tetoolkit
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py-theano
|
Fixed Theano GPU support (#7325)
|
2018-02-22 09:45:37 -08:00 |
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py-tifffile
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py-toml
|
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py-tomopy
|
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py-tornado
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py-tqdm
|
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py-traceback2
|
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py-traitlets
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py-tuiview
|
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py-twisted
|
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py-typing
|
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py-tzlocal
|
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py-umi-tools
|
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py-unittest2
|
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py-unittest2py3k
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py-urllib3
|
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py-urwid
|
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py-vcversioner
|
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py-virtualenv
|
|
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|
py-virtualenv-clone
|
Added virtualenvwrapper python package (#7270)
|
2018-02-22 09:47:05 -08:00 |
|
py-virtualenvwrapper
|
Added virtualenvwrapper python package (#7270)
|
2018-02-22 09:47:05 -08:00 |
|
py-vmd-python
|
VMD-python v2.0.10 - new package (#7490)
|
2018-03-21 11:08:58 -05:00 |
|
py-vsc-base
|
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py-vsc-install
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py-wcsaxes
|
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py-wcwidth
|
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py-webkit-server
|
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py-werkzeug
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py-wheel
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py-widgetsnbextension
|
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py-wrapt
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py-xarray
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py-xattr
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py-xlrd
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py-xlsxwriter
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py-xmlrunner
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py-xopen
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py-xpyb
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py-xvfbwrapper
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py-yapf
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py-yt
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py-zmq
|
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|
python
|
python: dbm module + version 3.6.4 (#7520)
|
2018-03-19 22:19:26 +01:00 |
|
qbank
|
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qbox
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qhull
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qmcpack
|
QMCPACK - General Improvements (#6958)
|
2018-02-23 09:52:46 -08:00 |
|
qmd-progress
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qrupdate
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|
qt
|
OpenSpeedShop package: add support for building on cray (#7338)
|
2018-03-07 14:26:07 -08:00 |
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qt-creator
|
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qtgraph
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qthreads
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quinoa
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qwt
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|
r
|
R package: add version v3.2.5 (#7139)
|
2018-02-13 12:11:52 -08:00 |
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r-a4
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r-a4base
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r-a4classif
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r-a4core
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r-a4preproc
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r-a4reporting
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r-abadata
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r-abaenrichment
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r-abind
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r-absseq
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r-acde
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r-acepack
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r-acgh
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r-acme
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r-ada
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r-adabag
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r-ade4
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r-adegenet
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r-adsplit
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r-affxparser
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r-affy
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r-affycomp
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r-affycompatible
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r-affycontam
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r-affycoretools
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r-affydata
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r-affyexpress
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r-affyilm
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r-affyio
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r-affypdnn
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r-affyplm
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r-affyqcreport
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r-affyrnadegradation
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r-agdex
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r-agilp
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r-agimicrorna
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r-aims
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r-aldex2
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r-allelicimbalance
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r-alpine
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r-als
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r-alsace
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r-altcdfenvs
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r-ampliqueso
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r-analysispageserver
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r-anaquin
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r-aneufinder
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r-aneufinderdata
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r-annaffy
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r-annotate
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r-annotationdbi
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r-annotationfilter
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r-annotationforge
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r-annotationhub
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r-ape
|
New package r-phangorn and its dependencies (#7034)
|
2018-03-08 08:30:02 +01:00 |
|
r-assertthat
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r-backports
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r-bamsignals
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r-base64
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r-base64enc
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r-beanplot
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r-bh
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r-bindr
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r-bindrcpp
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r-biobase
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r-biocgenerics
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r-biocinstaller
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r-biocparallel
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r-biocstyle
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r-biomart
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r-biomformat
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r-biostrings
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r-biovizbase
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r-bit
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r-bit64
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r-bitops
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r-blob
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r-bookdown
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r-boot
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r-brew
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r-broom
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r-bsgenome
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r-bumphunter
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r-c50
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r-callr
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r-car
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r-caret
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r-category
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r-catools
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r-cellranger
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r-checkmate
|
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r-checkpoint
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r-chemometrics
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r-chron
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r-circlize
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r-class
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r-classint
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r-cli
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r-clipr
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r-cluster
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r-clusterprofiler
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r-cner
|
r-cner: new package (#7228)
|
2018-03-09 08:36:26 +01:00 |
|
r-coda
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r-codetools
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r-coin
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r-colorspace
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r-complexheatmap
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r-corpcor
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r-corrplot
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r-covr
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r-cowplot
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r-crayon
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r-crosstalk
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r-cubature
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r-cubist
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r-curl
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r-data-table
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r-dbi
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r-dbplyr
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r-delayedarray
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r-deldir
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r-dendextend
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r-deoptim
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r-deoptimr
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r-deseq
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r-deseq2
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r-desolve
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r-devtools
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r-diagrammer
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r-dichromat
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r-diffusionmap
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r-digest
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r-diptest
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r-dirichletmultinomial
|
r-dirichletmultinomial: Create new package. (#7227)
|
2018-03-21 16:55:35 -05:00 |
|
r-dnacopy
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r-do-db
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r-domc
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r-doparallel
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r-dorng
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r-dose
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r-downloader
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r-dplyr
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r-dt
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r-dtw
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r-dygraphs
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r-e1071
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r-edger
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r-ellipse
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r-ensembldb
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r-ergm
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r-evaluate
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r-expm
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r-factoextra
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r-factominer
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r-fastmatch
|
New package r-phangorn and its dependencies (#7034)
|
2018-03-08 08:30:02 +01:00 |
|
r-ff
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r-fftwtools
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r-fgsea
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r-filehash
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r-flashclust
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r-flexmix
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r-fnn
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r-forcats
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r-foreach
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r-forecast
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r-foreign
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r-formatr
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r-formula
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r-fpc
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r-fracdiff
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r-futile-logger
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r-futile-options
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r-gbm
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r-gcrma
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r-gdata
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r-gdsfmt
|
r-gdsfmt: new package (#7035)
|
2018-01-23 09:42:10 +01:00 |
|
r-geiger
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r-genefilter
|
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r-geneplotter
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r-genomeinfodb
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r-genomeinfodbdata
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-geomorph
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r-geoquery
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r-geosphere
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r-getopt
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r-getoptlong
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r-ggally
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r-ggbio
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r-ggdendro
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r-ggjoy
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r-ggmap
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r-ggplot2
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r-ggpubr
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r-ggrepel
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r-ggridges
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r-ggsci
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r-ggvis
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r-gistr
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r-git2r
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r-glmnet
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r-globaloptions
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r-glue
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r-gmodels
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r-gmp
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r-go-db
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r-googlevis
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r-gosemsim
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r-gostats
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r-gplots
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r-graph
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r-gridbase
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r-gridextra
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r-gseabase
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r-gsubfn
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r-gtable
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r-gtools
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r-gtrellis
|
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r-gviz
|
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r-haven
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r-hexbin
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r-highr
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r-hmisc
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r-hms
|
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r-htmltable
|
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r-htmltools
|
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r-htmlwidgets
|
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r-httpuv
|
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r-httr
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r-hwriter
|
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r-hypergraph
|
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r-ica
|
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r-igraph
|
New package r-phangorn and its dependencies (#7034)
|
2018-03-08 08:30:02 +01:00 |
|
r-illuminaio
|
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|
r-impute
|
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r-influencer
|
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r-inline
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r-interactivedisplaybase
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r-ipred
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r-iranges
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r-irdisplay
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r-irkernel
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r-irlba
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r-iso
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r-iterators
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r-janitor
|
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|
r-jaspar2018
|
r-jaspar2018: Create new package. (#7221)
|
2018-02-14 08:35:16 +01:00 |
|
r-jpeg
|
|
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r-jsonlite
|
|
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|
r-kegg-db
|
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r-kegggraph
|
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|
r-keggrest
|
r-cner: new package (#7228)
|
2018-03-09 08:36:26 +01:00 |
|
r-kernlab
|
|
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|
r-kernsmooth
|
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r-kknn
|
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r-knitr
|
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r-labeling
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r-lambda-r
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r-laplacesdemon
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r-lars
|
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r-lattice
|
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r-latticeextra
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r-lava
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r-lazyeval
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r-leaflet
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r-leaps
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r-learnbayes
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r-limma
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r-lme4
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r-lmtest
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r-locfit
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r-log4r
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r-lpsolve
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r-lsei
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r-lubridate
|
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r-magic
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r-magrittr
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r-makecdfenv
|
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r-maldiquant
|
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r-mapproj
|
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r-maps
|
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r-maptools
|
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r-markdown
|
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|
r-mass
|
|
|
|
r-matrix
|
r-rcppblaze: new package (#7209)
|
2018-02-13 14:07:18 +01:00 |
|
r-matrixmodels
|
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r-matrixstats
|
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r-mclust
|
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r-mcmcglmm
|
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r-mda
|
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r-memoise
|
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r-mergemaid
|
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r-methodss3
|
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r-mgcv
|
r-powerlaw: new package (#7222)
|
2018-02-14 08:36:34 +01:00 |
|
r-mime
|
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r-minfi
|
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r-minqa
|
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r-mixtools
|
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r-mlbench
|
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r-mlinterfaces
|
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|
r-mnormt
|
|
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r-modelmetrics
|
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r-modelr
|
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r-modeltools
|
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r-mpm
|
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r-msnbase
|
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r-multcomp
|
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r-multtest
|
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r-munsell
|
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r-mvtnorm
|
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r-mzid
|
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r-mzr
|
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r-nanotime
|
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r-ncbit
|
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r-ncdf4
|
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r-network
|
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r-networkd3
|
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r-nlme
|
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r-nloptr
|
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r-nmf
|
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r-nnet
|
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r-nnls
|
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r-nor1mix
|
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r-np
|
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r-numderiv
|
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r-oligoclasses
|
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r-oo
|
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r-openssl
|
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r-org-hs-eg-db
|
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r-organismdbi
|
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r-packrat
|
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r-pacman
|
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r-pamr
|
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r-party
|
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r-partykit
|
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r-pathview
|
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r-pbapply
|
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r-pbdzmq
|
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r-pbkrtest
|
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r-pcamethods
|
|
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r-pcapp
|
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r-permute
|
|
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|
r-pfam-db
|
|
|
|
r-phangorn
|
New package r-phangorn and its dependencies (#7034)
|
2018-03-08 08:30:02 +01:00 |
|
r-phantompeakqualtools
|
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|
r-phyloseq
|
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r-pkgconfig
|
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|
r-pkgmaker
|
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r-plogr
|
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r-plotly
|
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r-plotrix
|
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r-pls
|
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r-plyr
|
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r-pmcmr
|
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r-png
|
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r-powerlaw
|
r-powerlaw: new package (#7222)
|
2018-02-14 08:36:34 +01:00 |
|
r-prabclus
|
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r-praise
|
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r-preprocesscore
|
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r-prettyunits
|
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r-prodlim
|
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r-progress
|
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r-protgenerics
|
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r-proto
|
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r-proxy
|
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r-pryr
|
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r-psych
|
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r-ptw
|
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r-purrr
|
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r-quadprog
|
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r-quantmod
|
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r-quantreg
|
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r-quantro
|
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r-qvalue
|
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r-r6
|
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r-randomforest
|
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r-ranger
|
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r-rappdirs
|
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r-raster
|
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r-rbgl
|
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r-rbokeh
|
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r-rcolorbrewer
|
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|
r-rcpp
|
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r-rcpparmadillo
|
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|
r-rcppblaze
|
r-rcppblaze: new package (#7209)
|
2018-02-13 14:07:18 +01:00 |
|
r-rcppcctz
|
|
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|
r-rcppeigen
|
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r-rcppprogress
|
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r-rcurl
|
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r-rda
|
|
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r-readr
|
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r-readxl
|
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r-registry
|
|
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r-rematch
|
|
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|
r-reordercluster
|
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r-reportingtools
|
|
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|
r-repr
|
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|
r-reprex
|
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|
r-reshape
|
|
|
|
r-reshape2
|
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r-rex
|
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r-rgdal
|
|
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r-rgeos
|
|
|
|
r-rgl
|
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r-rgooglemaps
|
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r-rgraphviz
|
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r-rhdf5
|
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r-rhtslib
|
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r-rinside
|
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r-rjags
|
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r-rjava
|
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r-rjson
|
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r-rjsonio
|
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r-rlang
|
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r-rmarkdown
|
|
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|
r-rminer
|
|
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|
r-rmpfr
|
|
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r-rmpi
|
|
|
|
r-rmysql
|
|
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r-rngtools
|
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|
r-robustbase
|
|
|
|
r-rocr
|
|
|
|
r-rodbc
|
|
|
|
r-roxygen2
|
|
|
|
r-rpart
|
|
|
|
r-rpart-plot
|
|
|
|
r-rpostgresql
|
|
|
|
r-rprojroot
|
|
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|
r-rsamtools
|
|
|
|
r-rsnns
|
|
|
|
r-rsqlite
|
|
|
|
r-rstan
|
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|
r-rstudioapi
|
|
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|
r-rtracklayer
|
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|
r-rtsne
|
|
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|
r-rvcheck
|
|
|
|
r-rvest
|
|
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|
r-rzmq
|
|
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|
r-s4vectors
|
|
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|
r-samr
|
|
|
|
r-sandwich
|
|
|
|
r-scales
|
|
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|
r-scatterplot3d
|
|
|
|
r-sdmtools
|
|
|
|
r-segmented
|
|
|
|
r-selectr
|
|
|
|
r-seqinr
|
|
|
|
r-seqlogo
|
r-seqlogo: new package (#7229)
|
2018-02-14 09:42:40 +01:00 |
|
r-seurat
|
|
|
|
r-sf
|
r-sf: new package (#6547)
|
2018-03-05 23:45:19 -06:00 |
|
r-sfsmisc
|
|
|
|
r-shape
|
|
|
|
r-shiny
|
|
|
|
r-shortread
|
|
|
|
r-siggenes
|
|
|
|
r-simpleaffy
|
|
|
|
r-sn
|
|
|
|
r-snow
|
|
|
|
r-snprelate
|
r-snprelate: new package (#7036)
|
2018-01-23 09:43:22 +01:00 |
|
r-som
|
|
|
|
r-somaticsignatures
|
|
|
|
r-sourcetools
|
|
|
|
r-sp
|
|
|
|
r-sparsem
|
|
|
|
r-spdep
|
|
|
|
r-speedglm
|
|
|
|
r-sqldf
|
|
|
|
r-stanheaders
|
|
|
|
r-statmod
|
|
|
|
r-statnet-common
|
|
|
|
r-stringi
|
|
|
|
r-stringr
|
|
|
|
r-strucchange
|
|
|
|
r-subplex
|
|
|
|
r-summarizedexperiment
|
|
|
|
r-survey
|
|
|
|
r-survival
|
|
|
|
r-sva
|
|
|
|
r-tarifx
|
|
|
|
r-tclust
|
|
|
|
r-tensora
|
|
|
|
r-testit
|
|
|
|
r-testthat
|
|
|
|
r-tfbstools
|
r-tfbstools: new package (#7243)
|
2018-03-13 12:40:41 +01:00 |
|
r-tfmpvalue
|
r-tfmpvalue: new package (#7230)
|
2018-02-14 08:49:09 +01:00 |
|
r-th-data
|
|
|
|
r-threejs
|
|
|
|
r-tibble
|
|
|
|
r-tidycensus
|
|
|
|
r-tidyr
|
|
|
|
r-tiff
|
|
|
|
r-tigris
|
|
|
|
r-timedate
|
|
|
|
r-topgo
|
|
|
|
r-trimcluster
|
|
|
|
r-trust
|
|
|
|
r-tseries
|
|
|
|
r-tsne
|
|
|
|
r-ttr
|
|
|
|
r-udunits2
|
|
|
|
r-units
|
|
|
|
r-utils
|
|
|
|
r-uuid
|
|
|
|
r-variantannotation
|
|
|
|
r-varselrf
|
|
|
|
r-vcd
|
|
|
|
r-vegan
|
|
|
|
r-vgam
|
|
|
|
r-viridis
|
|
|
|
r-viridislite
|
|
|
|
r-visnetwork
|
|
|
|
r-vsn
|
|
|
|
r-whisker
|
|
|
|
r-withr
|
|
|
|
r-xde
|
|
|
|
r-xgboost
|
|
|
|
r-xlconnect
|
|
|
|
r-xlconnectjars
|
|
|
|
r-xlsx
|
|
|
|
r-xlsxjars
|
|
|
|
r-xmapbridge
|
|
|
|
r-xml
|
|
|
|
r-xml2
|
|
|
|
r-xtable
|
|
|
|
r-xts
|
|
|
|
r-xvector
|
|
|
|
r-yaml
|
|
|
|
r-yapsa
|
|
|
|
r-yaqcaffy
|
|
|
|
r-yarn
|
|
|
|
r-zlibbioc
|
|
|
|
r-zoo
|
|
|
|
raft
|
|
|
|
raja
|
RAJA package: add versions and CUDA/openmp support (#7201)
|
2018-02-12 10:34:54 -08:00 |
|
randfold
|
|
|
|
random123
|
|
|
|
randrproto
|
|
|
|
rapidjson
|
rapidjson: new package (#7391)
|
2018-03-05 21:10:02 +01:00 |
|
ravel
|
|
|
|
raxml
|
|
|
|
ray
|
|
|
|
rdp-classifier
|
|
|
|
re2c
|
re2c@1.0.3: new package (#7092)
|
2018-01-31 13:46:17 +01:00 |
|
readline
|
|
|
|
recordproto
|
|
|
|
redundans
|
|
|
|
relion
|
Relion 2.1 - Using CudaPackage class (#6707)
|
2018-03-07 07:45:48 +01:00 |
|
rempi
|
|
|
|
rename
|
|
|
|
rendercheck
|
|
|
|
renderproto
|
|
|
|
repeatmasker
|
|
|
|
resourceproto
|
|
|
|
revbayes
|
|
|
|
rgb
|
|
|
|
rhash
|
|
|
|
rlwrap
|
|
|
|
rmlab
|
|
|
|
rna-seqc
|
rna-seqc package: JAVA_{ARGS,OPTS} for helper script (#6972)
|
2018-01-29 20:23:59 -08:00 |
|
rockstar
|
|
|
|
root
|
|
|
|
rose
|
|
|
|
rr
|
|
|
|
rsbench
|
|
|
|
rsem
|
|
|
|
rstart
|
|
|
|
rsync
|
Rsync package: Fix Src Link (#7367)
|
2018-03-01 22:42:26 -08:00 |
|
rtags
|
rtags: add 2.17 and for now comment-out 2.12 (#7126)
|
2018-01-31 13:36:22 +01:00 |
|
rtax
|
|
|
|
ruby
|
fix ruby build on gcc >= 7 (#7387)
|
2018-03-05 10:01:23 +01:00 |
|
ruby-gnuplot
|
|
|
|
ruby-narray
|
|
|
|
ruby-rubyinline
|
|
|
|
ruby-terminal-table
|
|
|
|
rust
|
|
|
|
rust-bindgen
|
|
|
|
sabre
|
|
|
|
sailfish
|
|
|
|
salmon
|
|
|
|
sambamba
|
|
|
|
samblaster
|
samblaster: Create new package (#7188)
|
2018-02-06 13:54:05 +01:00 |
|
samrai
|
|
|
|
samtools
|
|
|
|
sandbox
|
|
|
|
sas
|
|
|
|
satsuma2
|
|
|
|
savanna
|
|
|
|
saws
|
|
|
|
sbt
|
|
|
|
scala
|
|
|
|
scalasca
|
|
|
|
scalpel
|
|
|
|
scan-for-matches
|
|
|
|
scons
|
|
|
|
scorec-core
|
|
|
|
scorep
|
|
|
|
scotch
|
scotch%intel: remove restrict (#7148)
|
2018-03-21 14:22:50 -05:00 |
|
scr
|
|
|
|
screen
|
|
|
|
scripts
|
|
|
|
scrnsaverproto
|
|
|
|
sctk
|
|
|
|
sdl2
|
|
|
|
sdl2-image
|
|
|
|
sed
|
|
|
|
seqprep
|
|
|
|
seqtk
|
|
|
|
serf
|
|
|
|
sessreg
|
|
|
|
setxkbmap
|
|
|
|
sga
|
|
|
|
shapeit
|
|
|
|
shared-mime-info
|
|
|
|
shiny-server
|
|
|
|
shortbred
|
shortbred: Create new package (#7210)
|
2018-02-11 22:26:35 +01:00 |
|
shortstack
|
|
|
|
showfont
|
|
|
|
sickle
|
|
|
|
siesta
|
|
|
|
signalp
|
|
|
|
signify
|
|
|
|
silo
|
add -ldl to silo ldflags when building with static hdf5 in order to fix #7384 (#7385)
|
2018-03-05 13:28:37 +01:00 |
|
simplemoc
|
|
|
|
simul
|
|
|
|
simulationio
|
|
|
|
singularity
|
Singularity: new version (#7551)
|
2018-03-21 19:50:53 -05:00 |
|
slepc
|
|
|
|
slurm
|
Fix gtkplus build by hardcoding X11 support (#6971)
|
2018-01-23 15:24:20 -08:00 |
|
smalt
|
|
|
|
smproxy
|
|
|
|
snakemake
|
|
|
|
snap
|
|
|
|
snap-berkeley
|
|
|
|
snap-korf
|
|
|
|
snappy
|
|
|
|
snbone
|
snbone: fix build gcc-4.8 (#7317)
|
2018-02-27 13:02:04 +01:00 |
|
sniffles
|
|
|
|
snpeff
|
snpEff: Create new package. (#7382)
|
2018-03-06 09:34:22 +01:00 |
|
snphylo
|
snphylo: new package (#7045)
|
2018-03-21 16:21:55 -05:00 |
|
snptest
|
|
|
|
soap2
|
|
|
|
soapdenovo2
|
new package: Soapdenovo2 (#7047)
|
2018-02-20 10:33:41 -08:00 |
|
soapindel
|
|
|
|
soapsnp
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
sosflow
|
sosflow: add missing dependencies (#7182)
|
2018-03-06 18:17:49 +01:00 |
|
sowing
|
|
|
|
sox
|
|
|
|
spades
|
|
|
|
spark
|
|
|
|
sparsehash
|
|
|
|
sparta
|
|
|
|
spdlog
|
|
|
|
spectrum-mpi
|
|
|
|
speex
|
|
|
|
spglib
|
spglib: add new package (#7321)
|
2018-02-27 13:00:07 +01:00 |
|
sph2pipe
|
|
|
|
spherepack
|
|
|
|
spindle
|
|
|
|
spot
|
|
|
|
sqlite
|
Add sqlite 3.22.0 (#7335)
|
2018-03-06 18:09:09 +01:00 |
|
squid
|
|
|
|
sra-toolkit
|
|
|
|
sspace-longread
|
|
|
|
sspace-standard
|
|
|
|
sst-dumpi
|
|
|
|
sst-macro
|
|
|
|
stacks
|
|
|
|
staden-io-lib
|
|
|
|
star
|
star: needs zlib (#7418)
|
2018-03-08 08:27:41 +01:00 |
|
star-ccm-plus
|
|
|
|
startup-notification
|
|
|
|
stat
|
|
|
|
stc
|
|
|
|
stow
|
stow: new package (#7235)
|
2018-02-14 09:42:05 +01:00 |
|
stream
|
|
|
|
strelka
|
|
|
|
stress
|
|
|
|
stringtie
|
stringtie: add version 1.3.4a (#7164)
|
2018-02-03 09:52:51 +01:00 |
|
structure
|
|
|
|
sublime-text
|
|
|
|
subread
|
|
|
|
subversion
|
add versions 1.9.6 1.9.7 (#7562)
|
2018-03-22 21:07:34 +01:00 |
|
suite-sparse
|
suite-sparse: add cmake dependency (#7538)
|
2018-03-21 16:49:01 -05:00 |
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sumaclust
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sundials
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sundials: add the 'headers' and 'libs' properties (#7282)
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2018-02-19 22:11:04 -08:00 |
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superlu
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superlu-dist
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superlu-mt
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sw4lite
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swarm
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swfft
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swiftsim
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swig
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symengine
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sympol
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sz
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tabix
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talloc
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tantan
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tar
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targetp
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task
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taskd
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tasmanian
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tassel
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tau
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tcl
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Fix tclsh command for transitive dependencies (#7566)
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2018-03-23 10:05:54 +01:00 |
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tcl-tcllib
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tcl-tcllib: new package (#7481)
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2018-03-22 06:35:37 +01:00 |
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tcl-tclxml
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tcl-tclxml: new package (#7557)
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2018-03-22 07:36:59 -05:00 |
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tclap
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tclap: new package (#7390)
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2018-03-05 14:53:42 +01:00 |
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tcoffee
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tcptrace
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new package: tcptrace (#6993)
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2018-03-09 10:46:57 -08:00 |
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tcsh
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tealeaf
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tetgen
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tethex
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texinfo
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texlive
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the-platinum-searcher
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the-silver-searcher
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thrift
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thrust
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tig
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tinyxml
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tinyxml2
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tioga
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tk
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Treat tcl as extendable (#7410)
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2018-03-13 10:31:03 +09:00 |
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tmalign
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tmhmm
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tmux
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tmuxinator
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tophat
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tppred
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transabyss
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transdecoder
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transposome
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transset
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trapproto
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tree
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trf
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triangle
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trilinos
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Using self.prefix in Trilinos to avoid global name prefix undefined bug (#7478)
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2018-03-21 16:52:08 -05:00 |
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trimgalore
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trimmomatic
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trnascan-se
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trnascan-se: new package (#7351)
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2018-03-06 09:58:05 +01:00 |
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turbine
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turbomole
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tut
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twm
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tycho2
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typhonio
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uberftp
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ucx
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udunits2
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ufo-core
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ufo-filters
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unblur
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uncrustify
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unibilium
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unison
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units
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unixodbc
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unzip
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Adding unzip package. (#7446)
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2018-03-21 13:59:39 -05:00 |
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usearch
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util-linux
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util-macros
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uuid
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valgrind
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vampirtrace
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vardictjava
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vardictjava: Adding version 1.4.4 (#7223)
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2018-02-14 08:38:06 +01:00 |
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varscan
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vc
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vcftools
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vcsh
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vdt
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vecgeom
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veclibfort
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Changed keyword argument 'recurse' to 'recursive'
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2018-02-13 02:18:28 -08:00 |
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vegas2
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velvet
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verilator
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add package verilator (#7332)
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2018-02-27 23:46:02 -08:00 |
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videoproto
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viennarna
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viewres
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vim
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virtualgl
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visit
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vizglow
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vmatch
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voropp
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votca-csg
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votca-ctp
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votca-moo
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votca-tools
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votca-xtp
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vpfft
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vpic
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vsearch
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vtk
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Update gl/qt options for vtk package (#6551)
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2018-01-22 10:46:44 -08:00 |
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vtkh
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vtkm
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wannier90
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wcslib
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A new package: wcslib. (#7463)
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2018-03-20 22:16:55 -05:00 |
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wget
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windowswmproto
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wt
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wx
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Fix gtkplus build by hardcoding X11 support (#6971)
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2018-01-23 15:24:20 -08:00 |
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wxpropgrid
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x11perf
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xapian-core
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xauth
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xbacklight
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xbiff
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xbitmaps
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xbraid
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xbraid: add libs method (#7233)
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2018-02-14 10:40:56 +01:00 |
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xcalc
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xcb-demo
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xcb-proto
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xcb-util
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xcb-util-cursor
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xcb-util-errors
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xcb-util-image
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xcb-util-keysyms
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xcb-util-renderutil
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xcb-util-wm
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xcb-util-xrm
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xclip
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xclipboard
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xclock
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xcmiscproto
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xcmsdb
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xcompmgr
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xconsole
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xcursor-themes
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xcursorgen
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xdbedizzy
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xditview
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xdm
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xdpyinfo
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xdriinfo
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xedit
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xerces-c
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xev
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xextproto
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xeyes
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xf86bigfontproto
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xf86dga
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xf86dgaproto
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xf86driproto
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xf86miscproto
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xf86rushproto
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xf86vidmodeproto
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xfd
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xfindproxy
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xfontsel
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xfs
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xfsinfo
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xfwp
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xgamma
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xgc
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xhost
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xineramaproto
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xinit
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xinput
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xios
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xkbcomp
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xkbdata
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xkbevd
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xkbprint
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xkbutils
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xkeyboard-config
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xkill
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xload
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xlogo
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xlsatoms
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xlsclients
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xlsfonts
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xmag
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xman
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xmessage
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xmh
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xmlf90
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xmlto
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xmodmap
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xmore
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xorg-cf-files
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xorg-docs
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xorg-gtest
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xorg-server
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Xorg-server: Add dependencies and fix installation. (#7220)
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2018-03-21 13:53:26 -05:00 |
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xorg-sgml-doctools
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xphelloworld
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xplor-nih
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xplsprinters
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xpr
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xprehashprinterlist
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xprop
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xproto
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xproxymanagementprotocol
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xqilla
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xrandr
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xrdb
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xrefresh
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xrootd
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xrx
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xsbench
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xscope
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xsdk
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Added Nox for Trilinos installation by xSDK (#7219)
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2018-02-13 02:20:59 -08:00 |
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xsdktrilinos
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xset
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xsetmode
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xsetpointer
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xsetroot
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xsimd
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Xtensor 0.15.1 (#7215)
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2018-02-11 17:56:08 +01:00 |
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xsm
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xstdcmap
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xtensor
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Xtensor 0.15.1 (#7215)
|
2018-02-11 17:56:08 +01:00 |
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xtensor-python
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xtensor-python (#7217)
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2018-02-11 22:21:45 +01:00 |
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xterm
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Xterm: Fix URL (#7476)
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2018-03-14 06:58:42 +01:00 |
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xtl
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Xtensor 0.15.1 (#7215)
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2018-02-11 17:56:08 +01:00 |
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xtrans
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xtrap
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xts
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xvidtune
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xvinfo
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xwd
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xwininfo
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xwud
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xz
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yajl
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yambo
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yambo: added new package (#7301)
|
2018-02-22 12:11:51 +01:00 |
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yaml-cpp
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yasm
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yorick
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z3
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zeromq
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zfp
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updating zfp version (#7304)
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2018-02-27 21:49:04 +01:00 |
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zip
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zlib
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Changed keyword argument 'recurse' to 'recursive'
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2018-02-13 02:18:28 -08:00 |
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zoltan
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zsh
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zstd
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