57 lines
2.3 KiB
Python
57 lines
2.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import sys
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class Subread(MakefilePackage):
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"""The Subread software package is a tool kit for processing next-gen
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sequencing data."""
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homepage = "http://subread.sourceforge.net/"
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url = "https://downloads.sourceforge.net/project/subread/subread-1.5.2/subread-1.5.2-source.tar.gz"
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version('2.0.0', sha256='bd7b45f7d8872b0f5db5d23a385059f21d18b49e432bcb6e3e4a879fe51b41a8')
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version('1.6.4', sha256='b7bd0ee3b0942d791aecce6454d2f3271c95a010beeeff2daf1ff71162e43969')
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version('1.6.2', sha256='77b4896c1c242967c5883a06c0a5576a5ff220008a12aa60af9669d2f9a87d7a')
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version('1.6.0', sha256='31251ec4c134e3965d25ca3097890fb37e2c7a4163f6234515534fd325b1002a')
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version('1.5.2', sha256='a8c5f0e09ed3a105f01866517a89084c7302ff70c90ef8714aeaa2eab181a0aa')
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depends_on('zlib')
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def build(self, spec, prefix):
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plat = sys.platform
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with working_dir('src'):
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if plat.startswith('linux'):
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filter_file(
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'CC_EXEC = gcc',
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'CC_EXEC = {0}'.format(spack_cc),
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'Makefile.Linux'
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)
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if spec.target.family == 'aarch64':
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filter_file('-mtune=core2', '', 'Makefile.Linux')
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if spec.satisfies('@1.6.2:1.6.4'):
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filter_file(
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'-mtune=core2',
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'',
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'longread-one/Makefile'
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)
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elif spec.satisfies('@1.6.0'):
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filter_file(
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'-mtune=core2',
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'',
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'longread-mapping/Makefile'
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)
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make('-f', 'Makefile.Linux')
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elif plat.startswith('darwin'):
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make('-f', 'Makefile.MacOS')
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else:
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raise InstallError("The communication mechanism %s is not"
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"supported" % plat)
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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