47 lines
1.4 KiB
Python
47 lines
1.4 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class NcbiToolkit(AutotoolsPackage):
|
|
"""NCBI C++ Toolkit"""
|
|
|
|
homepage = "https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/"
|
|
url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--21_0_0.tar.gz"
|
|
|
|
version('21_0_0', '14e021e08b1a78ac9cde98d0cab92098')
|
|
|
|
depends_on('boost@1.35.0:')
|
|
depends_on('bzip2')
|
|
depends_on('libjpeg')
|
|
depends_on('libpng')
|
|
depends_on('libtiff')
|
|
depends_on('libxml2')
|
|
depends_on('libxslt@1.1.14:')
|
|
depends_on('lzo')
|
|
depends_on('pcre')
|
|
depends_on('giflib')
|
|
depends_on('sqlite@3.6.6:')
|
|
depends_on('zlib')
|
|
depends_on('samtools')
|
|
depends_on('bamtools')
|
|
|
|
def configure_args(self):
|
|
return ['--without-sybase', '--without-fastcgi']
|
|
|
|
def patch(self):
|
|
with working_dir(join_path('src', 'util', 'image')):
|
|
filter_file(r'jpeg_start_compress(&cinfo, true)',
|
|
'jpeg_start_compress(&cinfo, TRUE)',
|
|
'image_io_jpeg.cpp', string=True)
|
|
|
|
def build(self, spec, prefix):
|
|
compiler_version = self.compiler.version.joined
|
|
|
|
with working_dir(join_path(
|
|
'GCC{0}-DebugMT64'.format(compiler_version), 'build')):
|
|
make('all_r')
|