40 lines
1.8 KiB
Python
40 lines
1.8 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RBiovizbase(RPackage):
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"""The biovizBase package is designed to provide a set of
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utilities, color schemes and conventions for genomic data.
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It serves as the base for various high-level packages for
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biological data visualization. This saves development effort
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and encourages consistency."""
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homepage = "http://bioconductor.org/packages/biovizBase/"
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git = "https://git.bioconductor.org/packages/biovizBase.git"
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version('1.24.0', commit='ae9cd2ff665b74a8f45ed9c1d17fc0a778b4af6c')
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depends_on('r@3.4.0:3.4.9', when='@1.24.0')
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depends_on('r-scales', type=('build', 'run'))
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depends_on('r-hmisc', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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depends_on('r-dichromat', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-genomeinfodb', type=('build', 'run'))
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-summarizedexperiment', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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depends_on('r-rsamtools', type=('build', 'run'))
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depends_on('r-genomicalignments', type=('build', 'run'))
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depends_on('r-genomicfeatures', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-variantannotation', type=('build', 'run'))
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depends_on('r-ensembldb', type=('build', 'run'))
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depends_on('r-annotationfilter', type=('build', 'run'))
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