33 lines
1.2 KiB
Python
33 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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from os import symlink
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class Rmats(Package):
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"""MATS is a computational tool to detect differential alternative
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splicing events from RNA-Seq data."""
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homepage = "https://rnaseq-mats.sourceforge.net/index.html"
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url = "https://downloads.sourceforge.net/project/rnaseq-mats/MATS/rMATS.4.0.2.tgz"
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version('4.0.2', sha256='afab002a9ae836d396909aede96318f6dab6e5818078246419dd563624bf26d1')
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depends_on('python@2.7:', type='run')
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depends_on('py-numpy', type=('build', 'run'))
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depends_on('openblas')
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def install(self, spec, prefix):
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# since the tool is a python script we install it to /usr/lib
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install_tree('rMATS-turbo-Linux-UCS4', join_path(prefix.lib, 'rmats'))
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# the script has an appropriate shebang so a quick symlink will do
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set_executable(join_path(prefix.lib, 'rmats/rmats.py'))
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mkdirp(prefix.bin)
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symlink(join_path(prefix.lib, 'rmats/rmats.py'),
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join_path(prefix.bin, 'rmats'))
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