34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class BioconductorEbseq(RPackage):
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"""An R package for gene and isoform differential expression analysis of RNA-seq data.
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R/EBSeq is an R package for identifying genes and isoforms differentially
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expressed (DE) across two or more biological conditions in an RNA-seq
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experiment. Details can be found in Leng et al., 2013. It provides the syntax
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required for identifying DE genes and isoforms in a two-group RNA-seq
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experiment as well for identifying DE genes across more than two conditions
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(the commands for identifying DE isoforms across more than two conditions
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are the same as those required for gene-level analysis)."""
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homepage = "https://www.biostat.wisc.edu/~kendzior/EBSEQ/"
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url = "https://bioconductor.org/packages/release/bioc/src/contrib/EBSeq_1.40.0.tar.gz"
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maintainers("pabloaledo")
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bioc = "ebseq"
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version(
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"1.40.0",
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sha256="a5d3a88743d61062c6d68a426b19c53a4afd2fa216abc884d42c187780994378",
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deprecated=True,
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)
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depends_on("r-blockmodeling")
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depends_on("r-gplots")
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depends_on("r-testthat")
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