32 lines
1.1 KiB
Python
32 lines
1.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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from os import symlink
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class Bridger(MakefilePackage):
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"""Bridger : An Efficient De novo Transcriptome Assembler For
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RNA-Seq Data"""
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homepage = "https://sourceforge.net/projects/rnaseqassembly/"
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url = "https://downloads.sourceforge.net/project/rnaseqassembly/Bridger_r2014-12-01.tar.gz"
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version('2014-12-01', sha256='8fbec8603ea8ad2162cbd0c658e4e0a4af6453bdb53310b4b7e0d112e40b5737')
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depends_on('boost')
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depends_on('perl', type='run')
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def install(self, spec, prefix):
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# bridger depends very much on perl scripts/etc in the source tree
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install_path = join_path(prefix, 'usr/local/bridger')
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mkdirp(install_path)
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install_tree('.', install_path)
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# symlink the init script to /bin
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mkdirp(prefix.bin)
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symlink(join_path(install_path, 'Bridger.pl'),
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join_path(prefix.bin, 'Bridger.pl'))
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