62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
41 lines
2.0 KiB
Python
41 lines
2.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAdegenet(RPackage):
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"""Toolset for the exploration of genetic and genomic data. Adegenet
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provides formal (S4) classes for storing and handling various genetic
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data, including genetic markers with varying ploidy and hierarchical
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population structure ('genind' class), alleles counts by populations
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('genpop'), and genome-wide SNP data ('genlight'). It also implements
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original multivariate methods (DAPC, sPCA), graphics, statistical tests,
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simulation tools, distance and similarity measures, and several spatial
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methods. A range of both empirical and simulated datasets is also provided
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to illustrate various methods."""
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homepage = "https://github.com/thibautjombart/adegenet/wiki"
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url = "https://cloud.r-project.org/src/contrib/adegenet_2.0.1.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/adegenet"
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version('2.1.1', sha256='3043fe5d731a38ff0e266f090dcda448640c3d0fd61934c76da32d082e5dce7a')
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version('2.1.0', sha256='7ee44061002b41164bbc09256307ab02e536f4f2ac03f36c7dc8f85f6af4639a')
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version('2.0.1', sha256='7eddf46e64f680d54d034b68c50900d9bd5bc2e08309d062e230121b7460bb10')
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depends_on('r@2.14:', type=('build', 'run'))
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depends_on('r-ade4', type=('build', 'run'))
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depends_on('r-mass', type=('build', 'run'))
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depends_on('r-igraph', type=('build', 'run'))
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depends_on('r-ape', type=('build', 'run'))
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depends_on('r-shiny', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-seqinr', type=('build', 'run'))
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depends_on('r-spdep', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-dplyr@0.4.1:', type=('build', 'run'))
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depends_on('r-vegan', type=('build', 'run'))
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depends_on('r-boot', type=('build', 'run'))
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