28 lines
1.0 KiB
Python
28 lines
1.0 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack.package import *
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class PhrapCrossmatchSwat(MakefilePackage):
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"""phrap is a program for assembling shotgun DNA sequence data.
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cross_match is a general purpose utility for comparing any two DNA
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sequence sets using a 'banded' version of swat.
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swat is a program for searching one or more DNA or protein query
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sequences, or a query profile, against a sequence database"""
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homepage = "http://www.phrap.org/phredphrapconsed.html"
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url = "file://{0}/phrap-crossmatch-swat-1.090518.tar.gz".format(os.getcwd())
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manual_download = True
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version("1.090518", sha256="81f50c4410e8604cdefcc34ef6dc7b037be3bb45b94c439611a5590c1cf83665")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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for b in ["phrap", "cross_match", "swat"]:
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install(b, prefix.bin)
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