44 lines
1.7 KiB
Python
44 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import glob
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from spack.package import *
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class PyMacs2(PythonPackage):
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"""MACS2 Model-based Analysis of ChIP-Seq"""
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homepage = "https://github.com/taoliu/MACS"
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pypi = "MACS2/MACS2-2.2.4.tar.gz"
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version("2.2.7.1", sha256="ad2ca69bdd02a8942a68aae23133289b5c16ba382bcbe20c39fabf3948929de5")
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version("2.2.4", sha256="b131aadc8f5fd94bec35308b821e1f7585def788d2e7c756fc8cac402ffee25b")
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# patch to correctly identify python-3.10 as greater than required version
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patch(
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"https://github.com/macs3-project/MACS/pull/497.patch?full_index=1",
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sha256="eaff891b9b3c6a910bd5d454dcc6e21288c8d1ad4d6d6f77e370bc8f90921cbd",
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when="@2.2.7.1^python@3.10:",
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)
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depends_on("python@3.6:", when="@2.2.7.1:", type=("build", "run"))
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# version 2.2.4 does not build with python-3.10
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depends_on("python@3.5:3.9", when="@2.2.4", type=("build", "run"))
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depends_on("py-cython", type="build")
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# Most Python packages only require py-setuptools as a build dependency.
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# However, py-macs2 requires py-setuptools during runtime as well.
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depends_on("py-setuptools", type=("build", "run"))
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depends_on("py-setuptools@41.2:", when="@2.2.4:", type=("build", "run"))
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depends_on("py-numpy@1.17:", when="@2.2.4:", type=("build", "run"))
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depends_on("py-cython@0.29:", when="@2.2.4:", type="build")
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def patch(self):
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# regenerate C files from pyx files with cython
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files = glob.glob("MACS2/**/[!c]*.c", recursive=True)
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force_remove(*files)
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