44 lines
2.1 KiB
Python
44 lines
2.1 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RMzr(RPackage):
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"""parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass
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spectrometry data).
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mzR provides a unified API to the common file formats and parsers
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available for mass spectrometry data. It comes with a wrapper for the
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ISB random access parser for mass spectrometry mzXML, mzData and mzML
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files. The package contains the original code written by the ISB, and a
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subset of the proteowizard library for mzML and mzIdentML. The netCDF
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reading code has previously been used in XCMS."""
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bioc = "mzR"
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version("2.32.0", commit="ef57d59205398558898a748ba9c8de66b0bddb81")
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version("2.30.0", commit="563ae755cfc7de1ac8862247779182b7b3aebdcc")
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version("2.28.0", commit="bee7d6fb5f99e1fab5444ae1ad27b0bc6e83be9e")
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version("2.24.1", commit="e1d4de8761e6729fd45320d842691c8fe9116b7b")
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version("2.18.1", commit="13f9f9b1149859c3e29cfce941d958cc4f680546")
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version("2.16.2", commit="22d7dad98f46b5bed7f6f7b3a703dcdf5997f709")
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version("2.14.0", commit="bf1154bc45101d95b5a67c66980856a779b84bd4")
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version("2.12.0", commit="f05eb27ae31c3d019cca10fc3b9ee513cbcdfc5a")
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version("2.10.0", commit="a6168b68e48c281e88de9647254a8db1e21df388")
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depends_on("r@4.0.0:", type=("build", "run"), when="@2.30.0:")
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depends_on("r-rcpp@0.10.1:", type=("build", "run"))
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depends_on("r-biobase", type=("build", "run"))
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depends_on("r-biocgenerics@0.13.6:", type=("build", "run"))
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depends_on("r-protgenerics", type=("build", "run"))
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depends_on("r-protgenerics@1.9.1:", type=("build", "run"), when="@2.12.0:")
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depends_on("r-protgenerics@1.17.3:", type=("build", "run"), when="@2.24.1:")
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depends_on("r-ncdf4", type=("build", "run"), when="@2.16.2:")
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depends_on("r-rhdf5lib@1.1.4:", type=("build", "run"), when="@2.14.0:")
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depends_on("gmake", type="build")
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depends_on("r-zlibbioc", type=("build", "run"), when="@:2.28.0")
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