27 lines
950 B
Python
27 lines
950 B
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Qualimap(Package):
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"""Qualimap 2 is a platform-independent application written in Java
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and R that provides both a Graphical User Inteface (GUI) and a
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command-line interface to facilitate the quality control of alignment
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sequencing data and its derivatives like feature counts."""
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homepage = "http://qualimap.conesalab.org/"
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url = "https://bitbucket.org/kokonech/qualimap/downloads/qualimap_v2.2.1.zip"
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version("2.2.1", sha256="08f1d66e49c83c76c56c4225c53aee44f41e0592c8bdc84b8c4ecd975700e045")
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depends_on("java", type="run")
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def setup_run_environment(self, env):
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env.prepend_path("PATH", prefix)
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def install(self, spec, prefix):
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install_tree(".", prefix)
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