747f7decc4
- added several patches - added some missing dependencies - remove unneeded dependencies - add CUDA support - disable queue support, which was limited, and broken anyway - move package text that was specific to the package to a comment, so it does not show up the environment module - set conflicts for cuda and compilers Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
87 lines
2.0 KiB
Diff
87 lines
2.0 KiB
Diff
--- a/src/sgeutils/fsl_sub 2020-07-25 09:36:17.000000000 -0500
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+++ b/src/sgeutils/fsl_sub 2020-11-15 17:04:41.484972803 -0600
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@@ -81,7 +81,7 @@
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# "NONE". Note that a user can unset SGE_ROOT if they don't want the
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# cluster to be used.
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###########################################################################
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-METHOD=SGE
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+METHOD=NONE
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unset module
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if [[ "x$SGE_ROOT" = "x" ]] ; then
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METHOD=NONE
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@@ -145,7 +145,10 @@
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usage ()
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{
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- cat <<EOF
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+ case "$METHOD" in
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+ SGE)
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+
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+ cat <<EOF
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$command V1.1 - wrapper for job control system such as SGE
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@@ -190,7 +193,24 @@
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bigmem.q: This queue is like the verylong.q but has no memory limits.
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EOF
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+ ;;
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+ NONE)
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+
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+ cat <<EOF
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+$command V1.1 - wrapper for job control system such as SGE
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+
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+Usage: $command [options] <command>
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+
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+$command gzip *.img *.hdr
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+
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+ -t <filename> Specify a task file of commands to execute in parallel
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+ -l <logdirname> Where to output logfiles
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+ -v Verbose mode.
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+
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+EOF
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+ ;;
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+ esac
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exit 1
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}
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@@ -199,14 +219,29 @@
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usage
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fi
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-#if the newer whitespace-safe getopt format is available, use it
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-if [[ $(getopt -T >/dev/null 2>&1; echo $?) == 4 ]]; then
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- eval set -- $(getopt -s bash T:q:a:p:M:j:t:z:N:R:Fvm:l:s: "$@")
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- result=$?
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-else
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- set -- $(getopt T:q:a:p:M:j:t:z:N:R:Fvm:l:s: "$@")
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- result=$?
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-fi
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+case "$METHOD" in
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+ SGE)
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+ #if the newer whitespace-safe getopt format is available, use it
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+ if [[ $(getopt -T >/dev/null 2>&1; echo $?) == 4 ]]; then
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+ eval set -- $(getopt -s bash T:q:a:p:M:j:t:z:N:R:Fvm:l:s: "$@")
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+ result=$?
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+ else
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+ set -- $(getopt T:q:a:p:M:j:t:z:N:R:Fvm:l:s: "$@")
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+ result=$?
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+ fi
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+ ;;
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+ NONE)
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+ #if the newer whitespace-safe getopt format is available, use it
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+ if [[ $(getopt -T >/dev/null 2>&1; echo $?) == 4 ]]; then
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+ eval set -- $(getopt -s bash t:vl: "$@")
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+ result=$?
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+ else
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+ set -- $(getopt t:vl: "$@")
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+ result=$?
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+ fi
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+ ;;
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+esac
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+
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if [[ "$result" != 0 ]] ; then
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echo "What? Your arguments make no sense!"
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fi
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