b24f2875e6
* setuptools: deprecated old versions * py-zope-interface: deprecate versions requiring old setuptools verions * py-botorch: deprecate versions requiring old setuptools verions * py-deepsig: deprecate versions requiring old setuptools verions * py-scipy: deprecate versions requiring old setuptools verions * py-openslide-python: deprecate versions requiring old setuptools verions * py-setuptools: fixup python 3.8 comment
263 lines
13 KiB
Python
263 lines
13 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class PyScipy(PythonPackage):
|
|
"""Fundamental algorithms for scientific computing in Python."""
|
|
|
|
homepage = "https://www.scipy.org/"
|
|
pypi = "scipy/scipy-1.10.1.tar.gz"
|
|
git = "https://github.com/scipy/scipy.git"
|
|
|
|
maintainers("adamjstewart", "rgommers")
|
|
|
|
license("BSD-3-Clause")
|
|
|
|
version("main", branch="main")
|
|
version("1.15.2", sha256="cd58a314d92838f7e6f755c8a2167ead4f27e1fd5c1251fd54289569ef3495ec")
|
|
version("1.15.1", sha256="033a75ddad1463970c96a88063a1df87ccfddd526437136b6ee81ff0312ebdf6")
|
|
version("1.15.0", sha256="300742e2cc94e36a2880ebe464a1c8b4352a7b0f3e36ec3d2ac006cdbe0219ac")
|
|
version("1.14.1", sha256="5a275584e726026a5699459aa72f828a610821006228e841b94275c4a7c08417")
|
|
version("1.14.0", sha256="b5923f48cb840380f9854339176ef21763118a7300a88203ccd0bdd26e58527b")
|
|
version("1.13.1", sha256="095a87a0312b08dfd6a6155cbbd310a8c51800fc931b8c0b84003014b874ed3c")
|
|
version("1.13.0", sha256="58569af537ea29d3f78e5abd18398459f195546bb3be23d16677fb26616cc11e")
|
|
version("1.12.0", sha256="4bf5abab8a36d20193c698b0f1fc282c1d083c94723902c447e5d2f1780936a3")
|
|
version("1.11.4", sha256="90a2b78e7f5733b9de748f589f09225013685f9b218275257f8a8168ededaeaa")
|
|
version("1.11.3", sha256="bba4d955f54edd61899776bad459bf7326e14b9fa1c552181f0479cc60a568cd")
|
|
version("1.11.2", sha256="b29318a5e39bd200ca4381d80b065cdf3076c7d7281c5e36569e99273867f61d")
|
|
version("1.11.1", sha256="fb5b492fa035334fd249f0973cc79ecad8b09c604b42a127a677b45a9a3d4289")
|
|
version("1.11.0", sha256="f9b0248cb9d08eead44cde47cbf6339f1e9aa0dfde28f5fb27950743e317bd5d")
|
|
version("1.10.1", sha256="2cf9dfb80a7b4589ba4c40ce7588986d6d5cebc5457cad2c2880f6bc2d42f3a5")
|
|
version("1.10.0", sha256="c8b3cbc636a87a89b770c6afc999baa6bcbb01691b5ccbbc1b1791c7c0a07540")
|
|
version("1.9.3", sha256="fbc5c05c85c1a02be77b1ff591087c83bc44579c6d2bd9fb798bb64ea5e1a027")
|
|
version("1.9.2", sha256="99e7720caefb8bca6ebf05c7d96078ed202881f61e0c68bd9e0f3e8097d6f794")
|
|
version("1.9.1", sha256="26d28c468900e6d5fdb37d2812ab46db0ccd22c63baa095057871faa3a498bc9")
|
|
version("1.9.0", sha256="c0dfd7d2429452e7e94904c6a3af63cbaa3cf51b348bd9d35b42db7e9ad42791")
|
|
version("1.8.1", sha256="9e3fb1b0e896f14a85aa9a28d5f755daaeeb54c897b746df7a55ccb02b340f33")
|
|
version("1.8.0", sha256="31d4f2d6b724bc9a98e527b5849b8a7e589bf1ea630c33aa563eda912c9ff0bd")
|
|
version("1.7.3", sha256="ab5875facfdef77e0a47d5fd39ea178b58e60e454a4c85aa1e52fcb80db7babf")
|
|
version("1.7.2", sha256="fa2dbabaaecdb502641b0b3c00dec05fb475ae48655c66da16c9ed24eda1e711")
|
|
version("1.7.1", sha256="6b47d5fa7ea651054362561a28b1ccc8da9368a39514c1bbf6c0977a1c376764")
|
|
version("1.7.0", sha256="998c5e6ea649489302de2c0bc026ed34284f531df89d2bdc8df3a0d44d165739")
|
|
with default_args(deprecated=True):
|
|
version("1.6.3", sha256="a75b014d3294fce26852a9d04ea27b5671d86736beb34acdfc05859246260707")
|
|
version("1.6.2", sha256="e9da33e21c9bc1b92c20b5328adb13e5f193b924c9b969cd700c8908f315aa59")
|
|
version("1.6.1", sha256="c4fceb864890b6168e79b0e714c585dbe2fd4222768ee90bc1aa0f8218691b11")
|
|
version("1.6.0", sha256="cb6dc9f82dfd95f6b9032a8d7ea70efeeb15d5b5fd6ed4e8537bb3c673580566")
|
|
version("1.5.4", sha256="4a453d5e5689de62e5d38edf40af3f17560bfd63c9c5bd228c18c1f99afa155b")
|
|
version("1.5.3", sha256="ddae76784574cc4c172f3d5edd7308be16078dd3b977e8746860c76c195fa707")
|
|
version("1.5.2", sha256="066c513d90eb3fd7567a9e150828d39111ebd88d3e924cdfc9f8ce19ab6f90c9")
|
|
version("1.5.1", sha256="039572f0ca9578a466683558c5bf1e65d442860ec6e13307d528749cfe6d07b8")
|
|
version("1.5.0", sha256="4ff72877d19b295ee7f7727615ea8238f2d59159df0bdd98f91754be4a2767f0")
|
|
version("1.4.1", sha256="dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59")
|
|
version("1.4.0", sha256="31f7cfa93b01507c935c12b535e24812594002a02a56803d7cd063e9920d25e8")
|
|
version("1.3.3", sha256="64bf4e8ae0db2d42b58477817f648d81e77f0b381d0ea4427385bba3f959380a")
|
|
version("1.3.2", sha256="a03939b431994289f39373c57bbe452974a7da724ae7f9620a1beee575434da4")
|
|
|
|
depends_on("c", type="build")
|
|
depends_on("cxx", type="build")
|
|
depends_on("fortran", type="build")
|
|
|
|
# Based on wheel availability on PyPI
|
|
with default_args(type=("build", "link", "run")):
|
|
depends_on("python@3.10:3.13", when="@1.14.1:")
|
|
depends_on("python@3.10:3.12", when="@1.14.0")
|
|
depends_on("python@3.9:3.12", when="@1.11.2:1.13")
|
|
depends_on("python@3.8:3.11", when="@1.9.2:1.11.1")
|
|
depends_on("python@3.8:3.10", when="@1.8:1.9.1")
|
|
depends_on("python@:3.10", when="@1.7.2:1.7")
|
|
depends_on("python@:3.9", when="@1.5.4:1.7.1")
|
|
depends_on("python@:3.8", when="@1.3.2:1.5.3")
|
|
|
|
# Build dependencies (do not include upper bound unless known issues)
|
|
with default_args(type="build"):
|
|
depends_on("py-meson-python@0.15:", when="@1.12:")
|
|
depends_on("py-meson-python@0.12.1:", when="@1.11:")
|
|
depends_on("py-meson-python@0.11:", when="@1.10:")
|
|
depends_on("py-meson-python@0.9:", when="@1.9.2:")
|
|
depends_on("py-meson-python@0.8.1:", when="@1.9.1:")
|
|
depends_on("py-meson-python@0.7:", when="@1.9:")
|
|
depends_on("py-cython@3.0.8:", when="@1.13:")
|
|
depends_on("py-cython@0.29.35:", when="@1.12")
|
|
depends_on("py-cython@0.29.35:2", when="@1.11")
|
|
depends_on("py-cython@0.29.32:2", when="@1.9.2:1.10")
|
|
depends_on("py-cython@0.29.21:2", when="@1.9.0:1.9.1")
|
|
depends_on("py-cython@0.29.18:2", when="@1.7:1.8")
|
|
with default_args(type=("build", "link")):
|
|
depends_on("py-pybind11@2.13.2:", when="@1.15:")
|
|
depends_on("py-pybind11@2.12:", when="@1.13:")
|
|
depends_on("py-pybind11@2.10.4:", when="@1.11:")
|
|
depends_on("py-pybind11@2.10.1:", when="@1.10:")
|
|
depends_on("py-pybind11@2.4.3:", when="@1.5:")
|
|
depends_on("py-pybind11@2.4.0:", when="@1.4.1:")
|
|
depends_on("py-pybind11@2.2.4:", when="@1.4.0:")
|
|
depends_on("py-pythran@0.14:", when="@1.13:")
|
|
depends_on("py-pythran@0.15:", when="@1.12")
|
|
depends_on("py-pythran@0.12:", when="@1.10:")
|
|
depends_on("py-pythran@0.10:", when="@1.8:")
|
|
depends_on("py-pythran@0.9.12:", when="@1.7.2:")
|
|
depends_on("py-pythran@0.9.11:", when="@1.7:")
|
|
depends_on("pkgconfig", when="@1.9:")
|
|
|
|
# Run dependencies
|
|
with default_args(type=("build", "link", "run")):
|
|
depends_on("py-numpy@1.23.5:2.4", when="@1.15:")
|
|
depends_on("py-numpy@1.23.5:2.2", when="@1.14")
|
|
depends_on("py-numpy@1.22.4:2.2", when="@1.13")
|
|
depends_on("py-numpy@1.22.4:1.28", when="@1.12")
|
|
depends_on("py-numpy@1.21.6:1.27", when="@1.11")
|
|
depends_on("py-numpy@1.19.5:1.26", when="@1.10")
|
|
depends_on("py-numpy@1.18.5:1.25", when="@1.9")
|
|
depends_on("py-numpy@1.17.3:1.24", when="@1.8")
|
|
depends_on("py-numpy@1.16.5:1.22", when="@1.6:1.7")
|
|
depends_on("py-numpy@1.14.5:1.21", when="@1.5")
|
|
depends_on("py-numpy@1.13.3:1.21", when="@1.3:1.4")
|
|
|
|
# Test dependencies
|
|
with default_args(type="test"):
|
|
depends_on("py-pytest")
|
|
depends_on("py-pooch")
|
|
depends_on("py-hypothesis@6.30:")
|
|
|
|
# Required to use --config-settings
|
|
depends_on("py-pip@23.1:", when="@1.9:", type="build")
|
|
|
|
# https://docs.scipy.org/doc/scipy/dev/toolchain.html#other-libraries
|
|
depends_on("lapack@3.7.1:", when="@1.9:")
|
|
depends_on("lapack@3.4.1:")
|
|
depends_on("lapack")
|
|
depends_on("blas")
|
|
|
|
# Historical dependencies
|
|
with default_args(type="build"):
|
|
depends_on("meson", when="@1.9.0:1.9.1")
|
|
depends_on("py-setuptools", when="@:1.8")
|
|
depends_on("py-setuptools@:59", when="@1.8")
|
|
depends_on("py-setuptools@:57", when="@1.7")
|
|
depends_on("py-setuptools@:51.0.0", when="@1.6")
|
|
|
|
# meson.build
|
|
# https://docs.scipy.org/doc/scipy/dev/toolchain.html#compilers
|
|
conflicts("%gcc@:7", when="@1.10:", msg="SciPy 1.10-1.13 requires GCC >= 8.0")
|
|
conflicts("%gcc@:9.0", when="@1.14:", msg="SciPy 1.14: requires GCC >= 9.1")
|
|
conflicts("%gcc@:4.7", when="@:1.9", msg="SciPy requires GCC >= 4.8")
|
|
conflicts("%apple-clang@:9", when="@1.10:", msg="SciPy requires Apple Clang >= 10")
|
|
conflicts(
|
|
"%msvc@:19.19",
|
|
when="@1.10:",
|
|
msg="SciPy requires at least vc142 (default with Visual Studio 2019) "
|
|
"when building with MSVC",
|
|
)
|
|
|
|
# https://github.com/spack/spack/issues/48243
|
|
conflicts("%intel", when="@1.14:", msg="SciPy 1.14: Use Intel LLVM instead of Intel Classic")
|
|
|
|
# https://github.com/scipy/scipy/issues/19831
|
|
conflicts("^openblas@0.3.26:", when="@:1.12")
|
|
|
|
# https://github.com/scipy/scipy/issues/19352
|
|
conflicts("^py-cython@3.0.3")
|
|
|
|
# https://github.com/mesonbuild/meson/pull/10909#issuecomment-1282241479
|
|
# Intel OneAPI ifx claims to support -fvisibility, but this does not work.
|
|
# Meson adds this flag for all Python extensions which include Fortran code.
|
|
conflicts("%oneapi@:2023.0", when="@1.9:")
|
|
# Unknown build error, version ranges may be incorrect
|
|
conflicts("%oneapi@2024:", when="@:1.8")
|
|
|
|
# error: expected unqualified-id (exact compiler versions unknown)
|
|
conflicts("%apple-clang@15:", when="@:1.9")
|
|
|
|
# https://docs.scipy.org/doc//scipy-1.10.1/release.1.7.3.html
|
|
conflicts("platform=darwin target=aarch64:", when="@:1.7.2")
|
|
|
|
# https://github.com/scipy/scipy/pull/11324
|
|
conflicts("@1.4.0:1.4.1", when="target=ppc64le:")
|
|
|
|
# https://github.com/scipy/scipy/issues/12860
|
|
patch(
|
|
"https://git.sagemath.org/sage.git/plain/build/pkgs/scipy/patches/extern_decls.patch?id=711fe05025795e44b84233e065d240859ccae5bd",
|
|
sha256="5433f60831cb554101520a8f8871ac5a32c95f7a971ccd68b69049535b106780",
|
|
when="@:1.5.3",
|
|
)
|
|
|
|
patch("scipy-clang.patch", when="@1.5.0:1.6.3 %clang")
|
|
|
|
# https://github.com/scipy/scipy/issues/21884
|
|
patch(
|
|
"https://github.com/scipy/scipy/commit/ab7d08c6148286059f6498ab5c3070268d13cbd9.patch?full_index=1",
|
|
sha256="37209324c6c2d9bf9284bf4726ec3ea7ecafabf736c7a72cf6789af97aebd30b",
|
|
when="@1.8.0:1.14.0",
|
|
)
|
|
|
|
@property
|
|
def archive_files(self):
|
|
return [join_path(self.stage.source_path, "build", "meson-logs", "meson-log.txt")]
|
|
|
|
@run_before("install")
|
|
def set_fortran_compiler(self):
|
|
if self.spec.satisfies("%fj"):
|
|
with open("setup.cfg", "w") as f:
|
|
f.write("[config_fc]\n")
|
|
f.write("fcompiler = fujitsu\n")
|
|
elif self.spec.satisfies("%intel") or self.spec.satisfies("%oneapi"):
|
|
if self.spec.satisfies("target=x86:"):
|
|
with open("setup.cfg", "w") as f:
|
|
f.write("[config_fc]\n")
|
|
f.write("fcompiler = intel\n")
|
|
elif self.spec.satisfies("target=x86_64:"):
|
|
with open("setup.cfg", "w") as f:
|
|
f.write("[config_fc]\n")
|
|
f.write("fcompiler = intelem\n")
|
|
|
|
def setup_build_environment(self, env):
|
|
# https://github.com/scipy/scipy/issues/9080
|
|
env.set("F90", spack_fc)
|
|
|
|
# https://github.com/scipy/scipy/issues/11611
|
|
if self.spec.satisfies("@:1.4 %gcc@10:"):
|
|
env.set("FFLAGS", "-fallow-argument-mismatch")
|
|
if self.spec.satisfies("^py-numpy@1.16:1.17"):
|
|
env.set("NPY_DISTUTILS_APPEND_FLAGS", "1")
|
|
|
|
# https://github.com/scipy/scipy/issues/14935
|
|
if self.spec.satisfies("%intel ^py-pythran"):
|
|
env.set("SCIPY_USE_PYTHRAN", "0")
|
|
|
|
# Pick up BLAS/LAPACK from numpy
|
|
if self.spec.satisfies("@:1.8"):
|
|
self["py-numpy"].setup_build_environment(env)
|
|
|
|
@when("@1.9:")
|
|
def config_settings(self, spec, prefix):
|
|
blas, lapack = self["py-numpy"].blas_lapack_pkg_config()
|
|
|
|
if spec.satisfies("%aocc") or spec.satisfies("%clang@18:"):
|
|
fortran_std = "none"
|
|
else:
|
|
fortran_std = "legacy"
|
|
|
|
return {
|
|
"builddir": "build",
|
|
"compile-args": f"-j{make_jobs}",
|
|
"setup-args": {
|
|
# http://scipy.github.io/devdocs/building/blas_lapack.html
|
|
"-Dfortran_std": fortran_std,
|
|
"-Dblas": blas,
|
|
"-Dlapack": lapack,
|
|
},
|
|
}
|
|
|
|
@run_before("install", when="@:1.8")
|
|
def set_blas_lapack(self):
|
|
self["py-numpy"].blas_lapack_site_cfg()
|
|
|
|
@run_after("install")
|
|
@on_package_attributes(run_tests=True)
|
|
def install_test(self):
|
|
with working_dir("spack-test", create=True):
|
|
python("-c", 'import scipy; scipy.test("full", verbose=2)')
|