46 lines
2.1 KiB
Python
46 lines
2.1 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RPhangorn(RPackage):
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"""Phylogenetic Reconstruction and Analysis.
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Allows for estimation of phylogenetic trees and networks using Maximum
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Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
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Offers methods for tree comparison, model selection and visualization of
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phylogenetic networks as described in Schliep et al. (2017)
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<doi:10.1111/2041-210X.12760>."""
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cran = "phangorn"
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license("GPL-2.0-or-later")
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version("2.11.1", sha256="10096ecae03e118aa4dbc60d9866175fad4849c948e004cf10c3868e3feed420")
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version("2.10.0", sha256="d153f87053a1e6eebf46be98fad3f118349008c559a6797b55613629cab85dce")
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version("2.8.1", sha256="6d471410ae29775104a94746936e8c1c54c7273dd289333973ec06dad489dc75")
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version("2.5.5", sha256="c58dc1ace26cb4358619a15da3ea4765dbdde1557acccc5103c85589a7571346")
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version("2.5.3", sha256="a306585a0aabe7360a2adaf9116ae2993fb5ceff641b198f2e01e4329d3768af")
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version("2.3.1", sha256="518c31f5b2c5f0a655d02a3c71b00c30caea2794dfc31f9d63f3d505bd7863eb")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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depends_on("r@3.2.0:", type=("build", "run"))
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depends_on("r@4.1.0:", type=("build", "run"), when="@2.8.1:")
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depends_on("r-digest", type=("build", "run"), when="@2.10.0:")
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depends_on("r-ape@5.0:", type=("build", "run"))
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depends_on("r-ape@5.5:", type=("build", "run"), when="@2.8.1:")
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depends_on("r-ape@5.6:", type=("build", "run"), when="@2.10.0:")
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depends_on("r-fastmatch", type=("build", "run"))
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depends_on("r-generics", type=("build", "run"), when="@2.10.0:")
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depends_on("r-igraph@1.0:", type=("build", "run"))
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depends_on("r-matrix", type=("build", "run"))
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depends_on("r-quadprog", type=("build", "run"))
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depends_on("r-rcpp", type=("build", "run"))
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depends_on("r-rcpp@0.12.0:", type=("build", "run"), when="@:2.5.5")
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depends_on("r-magrittr", type=("build", "run"), when="@:2.5.5")
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