a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
39 lines
1.2 KiB
Python
39 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Fastqvalidator(MakefilePackage):
|
|
"""The fastQValidator validates the format of fastq files."""
|
|
|
|
homepage = "http://genome.sph.umich.edu/wiki/FastQValidator"
|
|
git = "https://github.com/statgen/fastQValidator.git"
|
|
|
|
version('2017-01-10', commit='6d619a34749e9d33c34ef0d3e0e87324ca77f320')
|
|
|
|
resource(
|
|
name='libStatGen',
|
|
git='https://github.com/statgen/libStatGen.git',
|
|
commit='9db9c23e176a6ce6f421a3c21ccadedca892ac0c'
|
|
)
|
|
|
|
depends_on('zlib', type='link')
|
|
patch('chromosome.patch', when='@2017-01-10', working_dir='libStatGen')
|
|
|
|
@property
|
|
def build_targets(self):
|
|
return ['LIB_PATH_GENERAL={0}'.format(
|
|
join_path(self.stage.source_path, 'libStatGen'))]
|
|
|
|
@property
|
|
def install_targets(self):
|
|
return [
|
|
'INSTALLDIR={0}'.format(self.prefix.bin),
|
|
'LIB_PATH_GENERAL={0}'.format(
|
|
join_path(self.stage.source_path, 'libStatGen')),
|
|
'install'
|
|
]
|