a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
27 lines
1.0 KiB
Python
27 lines
1.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyAtropos(PythonPackage):
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"""Atropos is tool for specific, sensitive, and speedy trimming of NGS
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reads. It is a fork of the venerable Cutadapt read trimmer."""
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homepage = "https://atropos.readthedocs.io"
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pypi = "atropos/atropos-1.1.22.tar.gz"
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git = "https://github.com/jdidion/atropos.git"
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version('1.1.22', sha256='05e40cb9337421479c692e1154b962fbf811d7939b72c197a024929b7ae88b78')
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depends_on('python@3.3:', type=('build', 'run'))
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depends_on('py-setuptools', type=('build', 'run'))
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depends_on('py-cython@0.25.2:', type='build')
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depends_on('py-tqdm', type=('build', 'run'), when='+tqdm')
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depends_on('py-pysam', type=('build', 'run'), when='+pysam')
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variant('tqdm', default=False, description='Enable progress bar')
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variant('pysam', default=False, description='Enable bam file parsing')
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