31 lines
1.1 KiB
Python
31 lines
1.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RPhantompeakqualtools(RPackage):
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"""Computes informative enrichment and quality measures for
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ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. This is a modified version
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of r-spp to be used in conjunction with the phantompeakqualtools
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package."""
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homepage = "https://github.com/kundajelab/phantompeakqualtools"
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url = "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz"
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version('1.14', '4de207d570999170c1bf45bcba8c6d2d')
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depends_on('boost@1.41.0:')
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depends_on('r-catools', type=('build', 'run'))
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depends_on('r-snow', type=('build', 'run'))
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depends_on('r-snowfall', type=('build', 'run'))
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depends_on('r-bitops', type=('build', 'run'))
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depends_on('r-rsamtools', type=('build', 'run'))
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conflicts('%gcc@6:')
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def setup_environment(self, spack_env, run_env):
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spack_env.set('BOOST_ROOT', self.spec['boost'].prefix)
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