36 lines
1.3 KiB
Python
36 lines
1.3 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Poamsa(MakefilePackage):
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"""POA is Partial Order Alignment, a fast program for multiple sequence
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alignment in bioinformatics. Its advantages are speed, scalability,
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sensitivity, and the superior ability to handle branching / indels
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in the alignment."""
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homepage = "https://sourceforge.net/projects/poamsa"
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url = "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz"
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version("2.0", sha256="d98d8251af558f442d909a6527694825ef6f79881b7636cad4925792559092c2")
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def url_for_version(self, version):
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url = "https://downloads.sourceforge.net/project/poamsa/poamsa/{0}/poaV{1}.tar.gz"
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return url.format(version.dotted, version.up_to(1))
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def edit(self, spec, prefix):
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filter_file(r"^(char \*Program_name;)", "extern \\1", "black_flag.h")
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filter_file(r"^(char \*Program_version;)", "extern \\1", "black_flag.h")
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def build(self, spec, prefix):
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make("poa")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.lib)
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install("poa", prefix.bin)
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install("liblpo.a", prefix.lib)
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