8cbd349cb4
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28 lines
1.2 KiB
Python
28 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAcde(RPackage):
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"""This package provides a multivariate inferential analysis method
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for detecting differentially expressed genes in gene expression data.
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It uses artificial components, close to the data's principal
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components but with an exact interpretation in terms of differential
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genetic expression, to identify differentially expressed genes while
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controlling the false discovery rate (FDR). The methods on this
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package are described in the vignette or in the article
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'Multivariate Method for Inferential Identification of
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Differentially Expressed Genes in Gene Expression Experiments' by
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J. P. Acosta, L. Lopez-Kleine and S. Restrepo
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(2015, pending publication)."""
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homepage = "https://www.bioconductor.org/packages/acde/"
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url = "https://bioconductor.org/packages/release/bioc/src/contrib/acde_1.14.0.tar.gz"
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version('1.14.0', sha256='e8d9ad688610d4b72cab729141dc46fce580c97128d929885336bb138345b788')
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depends_on('r-boot', type=('build', 'run'))
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