51 lines
2.1 KiB
Python
51 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Mpest(MakefilePackage):
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"""MP-EST estimates species trees from a set of gene trees by maximizing
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a pseudo-likelihood function."""
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homepage = "http://faculty.franklin.uga.edu/lliu/content/mp-est"
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url = "https://faculty.franklin.uga.edu/lliu/sites/faculty.franklin.uga.edu.lliu/files/mpest_1.5.zip"
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version('1.5', 'f176d5301aa26567918664e5e30027d1')
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@property
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def build_directory(self):
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return join_path('mpest_{0}'.format(self.version), 'src')
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def install(self, spec, prefix):
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with working_dir(self.build_directory):
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mkdirp(prefix.bin)
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install('mpest', prefix.bin)
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def setup_environment(self, spack_env, run_env):
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if self.spec.satisfies('platform=darwin'):
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spack_env.set('ARCHITECTURE', 'mac')
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else:
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spack_env.set('ARCHITECTURE', 'unix')
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